RNA id: AMCG00005397


Basic Information

Item Value
RNA id AMCG00005397
length 4076
RNA type mRNA
GC content 0.58
exon number 8
gene id AMCG00005397
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 80442 ~ 90383 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCTGCACGCACGCGCTGGTCAAGCTGGCCTTCCTGCCCTCGCGCACCAGGTGTAAATTCTTCAGTTTGACGGAGACCCCCGAAGACTACACCATTATTGTGGACGAGGAGGGGTTTAAAGaGCTGCCACAGTCGGAGCATCTCAGCGTCGCGGAGGCCACGTGGCTGGCCCTCAATGTGGTCTCGGGGGGCGggagctcctccagctcccagCCGATCGGAGTCACCAAAATTGCCAAGTCCGTGATCGCGCCTCTGGCCGACCACAACATCTCGGTGTTCATGCTGTCCACCTACCAGACGGACTTCATCCTGGTGCGAGAGAGGGACCTGCCGCTGGTGATGCACACCCTGTCCTCCGAGTTCACTCTGCTAAGGGTGGTCAATGGGGAGACGGTGGCCGCCAACAGCCTGGGCGTCAGCAACGGCTTCGTCAAGCCCAAAATGGGTACAAACCCCTTACCATACCCCCCTGTTCCTCACTGGGTACACCCCCCGGACCCCCTGCCACTCTCCGTAccgctccccctcccccctccctccctccgctCACGCCACAGCTCAGTCAGCCCAGGTGCCAGTCGCTCGAACCTCTCGTTCAGTTCACAGGGCGGAGCAGCAGAAGCGCAGCATTGGTAAGGCACAGGCAGGTGCAGTACAGCGCCGTGAGAGTGCAGGAGAGTGTGGTAAATGCAGCGCTGAGCTAGGGCCAGGCAGAGGAGGGGGATACCAGGGGGAGTGTGCCACGGCGCCGGTCACACCCCCGGTGCCAGAGGTTTAGACAGCTGAGCTCCCCTGACCGCTGCCCCTCTCGCCCGCAGTGAAGCGGCCCGTCGTCCACCCGCTGTCCAGCCCCAGCAACATGTTCTGTGTGACCAGCCTGGACCCCGACACCCTGCCCTCCGTGGCCACCCTGCTGATGGACGTCATGTTCTACTCCCCCGGGGCGAAGGAGCCGGGTGCTGCTGGCGAGGACTCGGGACACATCcgcttcttctccttctctctgatCGAGGGCTATGTGTCGCTGGTGATGGACAAGCAGACGACGCACAGGTTTCCCAATAACGTCCTATTCACCAGCGCCTCAGGGGAGCTGTGGAAGATGGTCCGGATCGGGGGGCAGCCGCTGGGATTtgacGAGTGTGGCATCGTGGCTCAGATCTCCGAACCTCTGGCCATGGCTGACATTCCCGCCTACTACATCAGCACCTTCAAGTTCGACCATGCGCTGGTCCCCGAGGAGAACATCCAGTCTGTGATTGGAGCGCTGAGGACCAACGAGAGCGCGGGGCAGTGAGGCGGAGTGGCTGCGGCTCGGGGAGGGAGCCTCTCCGGGGGGCGCGGACCACGTCTCCCGTGAACTCCTCCACACTCCCGAAGTGCCGAGCGACCAGCGACCTGGGGGAGTGGGGGTGACGAACGGGCATCTCACCCCTGAACATACACTCCCCCTGCCCCGCCCCCACACCCGTTTCTACTTTCAAAGACTGTGCCAACTGCACCCCCCCTCACTCCACCACCGTTACCCCCGCCTCTACCAGGACCCGAGCCAGCGTGGCTGCAGTGttttccttccccctctctctctttctttctcccctcGCACACTTTGTCACCATGGCACGGTGCCTACTCAAGCCTGGGCTTCGGTTTGCCGTTGGCGGCCGACAGGCAGTGTGGCGCTCTCCGGCCTGGTGGACCTGTAGTGCGCCCTGGCTGCTCTCCGGCCTGAACCCGGGGCTGTTCTCCTTCATTTCCccgttttatttgttttctctgccaACCTGTTCTGCCTCCCGTTCGCTTAACGGAACCGAACGCATTTGTTACCGGTTCCCTCTGTCCACTTTAGGAAGGAGaatgtaaagtattattattttttttttattattattttttatttcttggcagacgcccttatccagggcgacttacaacataagtaaCCTAAGAGAGGATCGGCTGGCGTCCCCAGTGTTTCCCTGtagttttgttaatttctttcctttctctgtGCCATTTTTCAAAGAAGGTCCTCAGGCCCGAACTGATGCCTTGACCTGCCGCACAGCACAgtattggggggtgggggaggtggaCCGGGTTCACCGGACTCGGCTTCCCTTGTGGTTTTTAAAAAACGTTTAAAACTAATGTTGATATTGCACATGTGCCAGggtacaattgtattttaaaaagatatatttaaaaacttgttgctgttgttttaagtTCCCTGGGAGCCCCGAGCGGTCAGGGGACTTCCCATcacgtttgtttttcttgcacgAGGCCATGGCCCAGTCCAGcactcccagcatgcctctGGGCAGCACACTGGCTGTACCCCCCATTCTCTGTACACCTGCAGACAAAGGCAGACAGCTCTCCTGTCCTGTGAGATGAGCTGGGGCCGTGTATCGCTGGAGGGCTGTCCTCGTTCGGTCAGTCTGTTCCTTTTGTCACAATCCTGCCCTCTTTTTCGATTTTGCCAAATGTACCCAAGAGTCGGATGCACGGGGGGTCCGTGGACAGGGGGGGTGATGAGACAGACCCGCTGGCAGCGCTGTGTTGCACTTTACTGGCTTAAAGGCTCCTGCAGATTCACCACACGCAGTTATCCGTTTGTATGTTATCCTTTTTAAACCCGAGCAAAGGCCGGCGCGACAGCCCTCCCTCCCGACGGAGCGGTCACGGGCCTGTCCTAGGGCGGACAGGGGTCTGTCGGGGGTCTGTCTGAGGGAGGTTGAGTGAAGACCCCCCGACCCGCAGCGCCGGCTTCTCCTGCTGTCGTTCTGCAGACGGGACGCTCTCTCCGAGTGCCGTATTACGACCAGGCCGCAGTATTCTCTGATAccttctttctgtttgttttattggtaGAATTAGCACCTTAATATCGGAGCCTTTTATTCCAAAGGTGACAGTTGACactaaaaactaaatgcaaTAAAGGGGGGGGGTTGTTGCTTCAGGGGCTGTGGTGATAAAAAAGATGCACGAGAAAAATACTGATTCCAGAAGACATTGAAGCACAAAGGTTATCTTGccatataaaaagcaataagcTGCCATCTGATGATGCTGTAGTGTTAGCAGGGTGGGGGTCTGTGCCGGGTGGGGAGTGTATGAAGAGAACTGTGAGCTGAAGCCCCATGGGGAGGGAGACTTCACTCCCAGACCTGGGACACTGTTGTCTTATTCCTCATGTTTTTGCCTCTCCATCCTCCCTTCGCCAGGCCTGCTCTAAGCTGTGGGGGGGGTGTATCGGTACATGTGCAGATGGTTGCGGTGGCGATAACGTGGGCCGGGGGGGCCACGGCCGCGCCTGGCCGGTGGGAAGCCTGGTTTGAACGCACTAATTGTGATCGTTCTCTCCGACCCTTTCGTCCGGACGAACTGGTCCCACCCTCCCTGCCTGGAGGGCCGCCACTGCCTCGtcctttaatgttttgtatgaaatgATCACTATCGTCAGTTCTGTGGGGGTGTCGTTGCTGCAAAGGGCAGGAGACGGAGGTTTTGTGCAGCTGCCATGGGCCCCGGTTCGAGATAAACGCCCACTCTTGGCGATATCATATCGGTAGCTTTTCCTCGGCCTTGAGAGCGGCAGCACAGCCGGGAGACCCCCATCCCTGAGGGAGGGCCGCTGTGTGGGAGAAGCCCCTCGGCTGGAACCCTTTACTAACCCGGgattgtccttttctttttcctcgtCCTATACGCAGACGTTTCAGTAATGATAGCAGGGCTCTGTGCACTAATAGATAAAAACCGTTGCTGCTAGAAGATGAATGTACCCTGATAGCGCCTCCATCCCTGGTCTCTGGGCTCCGTGTGATCCCCCGCCCGCACCCCTCACCCACCCTGACGCcccagggctgtgtgtgttggggggtgacgggatgggggggtggggggctgtgaAAACGCGGTCGCCTCCATCTCCCAATCCCGAGCGGATGTGAGCCGAGAGCAGTCGCGCTTCAGGGAGACGGCGGCCCGGTCCGTCGGacagaatgaaaatgaatgaatcgtgtggcaaagaaaaataaagacgAAATTAAAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191242 lncRNA downstream 44047 35722 ~ 36395 (-) True G151903
TU191240 lncRNA downstream 47631 31994 ~ 32811 (-) True G151901
TU191229 lncRNA downstream 59886 20300 ~ 20556 (-) True G151891
TU191281 lncRNA upstream 4738 95121 ~ 99670 (-) False AMCG00005399
TU191282 lncRNA upstream 4738 95121 ~ 99670 (-) False AMCG00005399
TU191313 lncRNA upstream 18015 108398 ~ 112412 (-) True AMCG00005400
TU191322 lncRNA upstream 151771 242154 ~ 332344 (-) True G151957
TU191337 lncRNA upstream 256614 346997 ~ 350322 (-) True G151970
AMCG00005407 mRNA downstream 13409 62355 ~ 67033 (-) True AMCG00005407
AMCG00005406 mRNA downstream 19119 54208 ~ 61323 (-) True AMCG00005406
AMCG00005408 mRNA downstream 27023 42629 ~ 53419 (-) True AMCG00005408
AMCG00005409 mRNA downstream 38169 41220 ~ 42273 (-) True AMCG00005409
AMCG00005405 mRNA downstream 39412 38580 ~ 41030 (-) True AMCG00005405
AMCG00005399 mRNA upstream 3969 94352 ~ 99548 (-) True AMCG00005399
AMCG00005398 mRNA upstream 13747 104130 ~ 106498 (-) True AMCG00005398
AMCG00005400 mRNA upstream 20870 111253 ~ 120547 (-) False AMCG00005400
AMCG00005401 mRNA upstream 57652 148035 ~ 151114 (-) True AMCG00005401
AMCG00005396 mRNA upstream 136875 227258 ~ 232375 (-) True AMCG00005396
TU191268 other downstream 16714 62621 ~ 63728 (-) False AMCG00005407
TU191554 other upstream 1128944 1219327 ~ 1258926 (-) False G152133
TU191607 other upstream 1281000 1371383 ~ 1371737 (-) False AMCG00005419
TU191743 other upstream 1415557 1505940 ~ 1507628 (-) True G152277
TU191734 other upstream 1522390 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 1618300 1708683 ~ 1721202 (-) True AMCG00005461

Expression Profile