RNA id: AMCG00005399


Basic Information

Item Value
RNA id AMCG00005399
length 3345
RNA type mRNA
GC content 0.57
exon number 7
gene id AMCG00005399
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 94352 ~ 99670 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGCTGTTTACAGCTGGTTTCCTGAACACGTGTTCACCTCCACGCACTCGGGGTGCCTGCTCCGCCCGGTCTCCTGAGGCCGGGTTAAGAGTATGCTCCGCCCGGTCCGCCCTGCTCTTCTCCAGGGGAAGTTGCCCTGCTCTGTGGGTACACTGCCCGCCTGCGCAGGGCCAGAGAAGCGCGGGTTTAGCTTCCACGGCCGCACGTCATTGCGGTGGTGACAATGAGGCCCGCGACACTGCGGACGGGGCCCCGCTGGGGTCAGTCCGTGTGTGAGACTGAACAGCCACAACATGGCTGCCAGTTTGAAGCGTTTCGTTGGCTGTGGAGGCTGAGGCGTGAGAAAAGCCAAGCATGATCTCTGCAGATCACATGGTAACAATGAAGAATAAACGCcctccagagcacctgctgagACGCCAGTTGTCCCAGGAAACTCCTGATGCTCCTGCTCCTTCAGAGGTGAGGTTGTCTCCCGTCTTGAGCCGCTTCTTCAGCGACTGGGTGCCGAAGCACGACACCGGTGTGTGCCCAGATCCAGTGGGCCGAGGCCAGTGTAGTGCTGAGATCAAACCCTCCTCTTGCAACCCACGGCTGTGCCCCCCAGCAGCAGTGCTACTTATGAGGATGGACAGCTCTCCCCCTCGGGATGGGTTGAAGATACTGTCCACTGAGGTCGGCCGTCACCACGAGCGAGCTGCTGCGAGAGGTGCAGTAGCATGGACTGGCCAGCGGGTGGCTCCCAGGAGTGTTCTGTTGCCATCAGAGGTGAGAATCTTTCATAATGGAGTTAAAGCGGAGTGCCGGACTGTAGGAGGGGTGTGCTGGCTCAGCTGTACTttgtgcggggggggggggggggtgcagtgcCGTCAGCAGCTGACGGTGTTGCGGAACGTGGGCCGCACTGAATGGTATCTGCAGGCAACCTCTCCCCTGGCTGTGCTGTTCATTACACAGTGCTACAGTGACTCAGCATCTCGCATCGTTGCTACCCGGGCCGCCCATGCCCGGGGGGCTGGTATTTCTGCTGAGACAGGGACTCCTGTGACCCGCCCAGCACTGCGGTGTGGGGCTGTGGCTGCAGCCACATGGGGCACAAGTCTAAGTGTGTCTCGTTCTTGCAGCTCCACCAGTGATCTGCTGGGACGGAAGGATGTGGTGACTGGATGGACACGGCTCTGGGCACTGCTAAAACCCTCCTGTTCGGGGAGGATGTTGCCCCTCATGTCCTCCACGGTGTCTGGCCGCACTGAATGGTATCTGCAGGCAGCCTCTCCCCTGGCTGTGCTGTTCATTACACAGTGCTACAGTGACTCGGCATCTCGCATCGTTGCTCTCCGGGCCGCCTGTGCCCGGGGGGCTGGTATTTCTGCCGAGACAGGGACTCCCTCTGAGTGCCGGCTTCCCAGGAATCCGAGGGCTGTGGTGGCGGTGCATGGTGGCCCTGAGGAGCCGGCGCCCAGCTGTGTGGAGCTCCAGCTGCCGGTCCGGGAGGCTGTTGCGCTGTGGCGTTGCTTCTCCAATGGAGACTGGGGTGGCGGGGTCTGGGAGGTCATGTTAAGTGAAACCAacgttttatttaatctgtttagGGCTGTCTGTGGAAGAGGGGAAGATCCTGGCTTTGACGACGGGACGCTGCGGAGCTGGGTAAGGAGCTGCAGGGTGTTCCTACGGGTCGCTTTCAAAGGGGGTCTGTCAGGCTGTCCTGCTGGCGACCCTTCACGCAGCGACCCCACAGTGCTGCCCCTGGAGGACCGACGCGGTCCGCCTCAGTGCGGGCTCAGCTCTAGCTCCAGGGCGACAAACCCCTCATCCATGTGAGACGGGACTTCCCGTGATCTCGTACGAGTCCCTGGACTGCCCTGGTCTGGCACATGCTCTGGGTGGGGGATGTACCTGTCCAGTCGGTTGGGAGGTGCAAGTCGGTGCTTGCAGTCCTTGTAGAGCACGACTCGTGAATTGAAATGCTGGGGATCTGCAGTACAGCTACAGAACCGAGTCGGCAACCAACTAATGTCTCTTCCATCTCTAACAGCTGTTGGCCCTGAAGCGTTCCGGTGTGGTTTCTTTCCACTGTGGCTGGATGCCAGTGATTCCGGCTCCCAATTCACATGGTGCCTGTACTACAGTCGCAGTCCCCACCGCTCCAAGCTGACTTGTTGACGGAAGCAGACCTGAGCAGCAGTGTAATTTGTTGGTCACGGTGATCGCAGTCAGCCGTTCTGTTCCCCATACAGGACGTCTGACACTGCCCAGCTTTCATATAAACGTGCAGCACAGGTTTTATTCTGCTGCCGTCTCTCCTCCTGTATAGAATCAATGATTAAACTTAATTCTCTGGAGCCGAGCCTCCGTTGCCCAATCGGACGAGCTTCCTCCCCAGCACTGCACACTGTGAATTAAGATCTGAATGCGATTTGCCTAATAAAATATGGAATTGTATACTGCTGCATTCTGAGTATTTCCTCTAAAGATTTGTGATTCCTTCACTGGGGGGCTACAGAAGGATGGCTGGGAATGGTGTGTCCCTTGTGAAAGGGGTTGGTCTGTATTGGAAGTAAAACTAGGGCTGTGCTGTTTTCCCCTATAGACTCCTGCCCTTCCTAGGGGTCAGTCGGGGGACCCTTGCCTGGTCCTGCAGGGCAAGCAGGTGTGGGAGTGCATGGAGAAGGCTGAATTGGTCTTGTCCCAAATTGGCATCCCCTGTGGTTTGGCTGTGCAGCTGTGTGAAAGGTTCAGTGCTGATTTGACAGGTGGCCCAAGGGTGACTGGGAGTGGAGGATCAGTCGTGCTTCCTCACCCTCCCCACCTGTGCTGTCAACATGCACTGGCCCAATCGGCGATTCCAAAACTTAAAGGATGAAAAACGCCTCAGTTTCTGCATCCCTGGTCTAACGGCAGCTGCAGGCTCTAGTAAAGGAGCTCCTGTGCTGCAAAAGGCAGATCTCTCCCTGCTGGATGGGCTATGAAGGGCCAAGTTCTTGAATCCTGGTTCTGACCTTCATTCTTCTGCCCTGTGCTCACTGACAGCACCTTGGCCTGCTATGACCACAGTAGGTTCTGCTGGTGCCCGTGGGGCTGTTCCAAGGTTGTGTTATGGCACTGGGTCTctgccctggtcctggggaccccctgcCCTAGTGCTTTTCGTTCCATCCCAGTTCACGATGACTTAATTGAACGCTCAATTGCGctaatttgcttcatttgaatttttatattgtgtagCTTTCAAGATTAAGTTCCATCTACAGTTTCCTAATTAACATGAACTGTACAAcggtttaaaatgcaaattctcagattaggcaaattattaatttgggGTTCAATTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191242 lncRNA downstream 57957 35722 ~ 36395 (-) True G151903
TU191240 lncRNA downstream 61541 31994 ~ 32811 (-) True G151901
TU191229 lncRNA downstream 73796 20300 ~ 20556 (-) True G151891
TU191313 lncRNA upstream 8850 108398 ~ 112412 (-) True AMCG00005400
TU191322 lncRNA upstream 142606 242154 ~ 332344 (-) True G151957
TU191337 lncRNA upstream 247449 346997 ~ 350322 (-) True G151970
TU191340 lncRNA upstream 277807 377355 ~ 377713 (-) True G151972
TU191347 lncRNA upstream 591111 690659 ~ 690942 (-) True G151979
AMCG00005397 mRNA downstream 3969 80442 ~ 90383 (-) True AMCG00005397
AMCG00005407 mRNA downstream 27319 62355 ~ 67033 (-) True AMCG00005407
AMCG00005406 mRNA downstream 33029 54208 ~ 61323 (-) True AMCG00005406
AMCG00005408 mRNA downstream 40933 42629 ~ 53419 (-) True AMCG00005408
AMCG00005409 mRNA downstream 52079 41220 ~ 42273 (-) True AMCG00005409
AMCG00005398 mRNA upstream 4582 104130 ~ 106498 (-) True AMCG00005398
AMCG00005400 mRNA upstream 11705 111253 ~ 120547 (-) False AMCG00005400
AMCG00005401 mRNA upstream 48487 148035 ~ 151114 (-) True AMCG00005401
AMCG00005396 mRNA upstream 127710 227258 ~ 232375 (-) True AMCG00005396
AMCG00005394 mRNA upstream 148551 248099 ~ 251173 (-) True AMCG00005394
TU191268 other downstream 30624 62621 ~ 63728 (-) False AMCG00005407
TU191554 other upstream 1119779 1219327 ~ 1258926 (-) False G152133
TU191607 other upstream 1271835 1371383 ~ 1371737 (-) False AMCG00005419
TU191743 other upstream 1406392 1505940 ~ 1507628 (-) True G152277
TU191734 other upstream 1513225 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 1609135 1708683 ~ 1721202 (-) True AMCG00005461

Expression Profile