RNA id: AMCG00005401


Basic Information

Item Value
RNA id AMCG00005401
length 957
RNA type mRNA
GC content 0.67
exon number 6
gene id AMCG00005401
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 148035 ~ 151114 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGCCCGGCGCCCTGTGGGGTCTGGTGCCCTGTGGGGCCCGGCACTCTGTGGGGCCTGGCGCTCTGTGTTTCGTAACGACGACCAGATGTCCTGGCACGTTGTGTTGGGACCGGCTGGCTGCCTCTTCTCTGTACCAGCAGTGCGGAGCGATACGGCTTCACCGACTCAGTGACTCGgaggagaaaaaacacatcCGAGCGTCTGTTATTGAAACGTGTGTGTGTGGAGAGTGTGGAGGAGCTCGGAGCAGACGGCATGGTTACAGCGATTCGGAGCGCAGCGCGCCGTGTCTCCATGTAGCCGGGCTCGGCCAGCGCGTGGGGGTCAGcggagcagcagcagctcggAGACTCGGGGCCCGATCCTCCTGCCGACTCGTTTCTCTGTGGGTTCGGCTGAGTGGCGAAACGGTCGCATGCATGACACTCCGCAAAGGCGAGAAGACGACCATAAGCATCCAAGAGCACATGGCCATTGATGTCTGCCCCGGCCCCATCCAGCCCATCAAGCAGATCTCTGACTATTTCCCCCGCTTCCCGCGGGGTCTCCCCCCCACAGTGCCCCCCGCCCTCAGCCGCACCGGCTCCCTGCGCTCCTCCACCGGCCAGCTGTCCGGGGGCCTGCCGTCGGAGCCGTCCCGCGACGAGGACGACCTGGACCGGGCGCGTCGCTGTGTGAGCGACCGTGCTGCGgAAGCGGATCCTCCCGACACCGGGGACGAGGCGTTGGTGCCAAATGTGCCGCCCAGTCCCGGCAGGCCCGTGTCTGCGGAGTGCGCCAGCCGCCGGGCCGTGTCAGCGGTGCCGCGTGTGCCCATGGTGACGCAGCCGCCCGGGGACCGCAGGGCAGCCTGTTGTCTGGGGCTGATAGCTGTCACAGGCCGTGCACTGCCGGCAGTCAAAGAGCAGCCGTCACCGCGATCCGGGCCGCTGACAGGCCTGCCGCGGTGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191313 lncRNA downstream 35623 108398 ~ 112412 (-) True AMCG00005400
TU191281 lncRNA downstream 48365 95121 ~ 99670 (-) False AMCG00005399
TU191282 lncRNA downstream 48365 95121 ~ 99670 (-) False AMCG00005399
TU191242 lncRNA downstream 111640 35722 ~ 36395 (-) True G151903
TU191240 lncRNA downstream 115224 31994 ~ 32811 (-) True G151901
TU191322 lncRNA upstream 91040 242154 ~ 332344 (-) True G151957
TU191337 lncRNA upstream 195883 346997 ~ 350322 (-) True G151970
TU191340 lncRNA upstream 226241 377355 ~ 377713 (-) True G151972
TU191347 lncRNA upstream 539545 690659 ~ 690942 (-) True G151979
TU191479 lncRNA upstream 847240 998354 ~ 1009739 (-) True G152071
AMCG00005400 mRNA downstream 27488 111253 ~ 120547 (-) False AMCG00005400
AMCG00005398 mRNA downstream 41537 104130 ~ 106498 (-) True AMCG00005398
AMCG00005399 mRNA downstream 48487 94352 ~ 99548 (-) True AMCG00005399
AMCG00005397 mRNA downstream 57652 80442 ~ 90383 (-) True AMCG00005397
AMCG00005407 mRNA downstream 81002 62355 ~ 67033 (-) True AMCG00005407
AMCG00005396 mRNA upstream 76144 227258 ~ 232375 (-) True AMCG00005396
AMCG00005394 mRNA upstream 96985 248099 ~ 251173 (-) True AMCG00005394
AMCG00005395 mRNA upstream 109394 260508 ~ 267690 (-) True AMCG00005395
AMCG00005391 mRNA upstream 199651 350765 ~ 375012 (-) True AMCG00005391
AMCG00005387 mRNA upstream 247806 398920 ~ 400797 (-) True AMCG00005387
TU191268 other downstream 84307 62621 ~ 63728 (-) False AMCG00005407
TU191554 other upstream 1068213 1219327 ~ 1258926 (-) False G152133
TU191607 other upstream 1220269 1371383 ~ 1371737 (-) False AMCG00005419
TU191743 other upstream 1354826 1505940 ~ 1507628 (-) True G152277
TU191734 other upstream 1461659 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 1557569 1708683 ~ 1721202 (-) True AMCG00005461

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU458055 True 761 lncRNA 0.59 1 NC_047621.1 13988556 ~ 13989316 (+)