RNA id: AMCG00005406


Basic Information

Item Value
RNA id AMCG00005406
length 2679
RNA type mRNA
GC content 0.63
exon number 16
gene id AMCG00005406
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 54208 ~ 61323 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGCCACAAAAAATATGGCGGCGCTAGAGAGCCGCTTGCGTCACTGGCCAGGGTCAGAGGGCATGGTGTCGTCACGCTTTCCCCGGGAAATTCACACACGCTGCAGTGAGGAGCACAGGACCCGCTGTCGCTTACCAGCCATGGCCAAGATCACAGAGACAGTCCTGCTGGAGAGGGGATCCCCCAGGACCACCCGGCTGGAGAACATCAAGACTCTCAATCTTTCCAAGATGGGTTTGTGCTGCGCAGATCTGCCCGTGGCCCTGCTGTCCCGGCTGCGCGGCCTGACACGGTTGAACCTCTCTGGGAACCGTCTGCGTGAGCTGCCCAGCGGCCTGCAGCTGCCCGGCCTGCACATCAGCTCCTCTGCCAACCACCTGCGCTACGTCAACACCGAGACCCTAAAGCGACGGGTGTCTGCTCTGTGGGAGAGCAGTTTCCAGCCCCTCACTGCCCTGACGGCGGAGCGCCGGCGCACCGTGGAGCAGGAGTTTGTGACGCTGGCCTGTGCCAAGGTCAAGTACGGCCCAAACTCCCTGAGCGACTACTACAGGTGGAGGGTGGAGATGCTAGCCAGGGCCCTGCTGCACTCGCTGGTGGAGGAGCGAGAGGGGGAGACGCTCGGCAACAGCCAGACGGACGCAGACGCCGGCCAGACCCACGCCGACCCGAGTCTCCGCTCCCCCCGCAAGAGGAGGGGCGCTGACTCGGGTTCCGGTCCAGAGCAGGAGACCCCAAAAAAATCCCGGCAGGCCGAAGCCGAGGCAGCTGAGCCCACCGCGTCCAGCCCCCGGAAGTCGTCCCGTCTGAAGAGTGTGCTCCCCCAGCCCGAGACACCCTCCAAAAGCCCCAGGAAGCCGGCGAGGGCAGACGGATGCCCCCCCGAGCCCGCCCTGCCCTGCACTGCCCCCAAGACACCCCCGAAGAGCCGCCCAGCAGAGGGGCCGAGGGAGAACGGGACGCCCCGCAAGACCAGCGGCTCGACGtgtttgGAGCCGGTGCACGTGCTGCAGTGTCACAGCCGGCAGGACAGTCCCGAGGACTTCAGCACCCAGCTGTGGGCCTGCGCCTTCCAGCCCGACTCGGACCCGGagcCCTGCGGCTCCAGTGTGGTGGCCACCTGTGGCGGGGAGACGGTGTGCCTGATTGACTGCCAGGCTGGGACAGTGCTCAAGAAGTACAAAGTGCCAGGAGAGGAGTTCTTCTCCCTGGCCTGGTCCAGCGTGCTGATGTCCCGGGAGGGGGGCACCCTGCGGCAGTGCGGCATGTTGGCGGCGGGGGGGCGGCGCGGCGTGGTCAAGCTCATCCACCCCCGGGCCAACTGTGCCTACGGGGAATTCCGCGCCAGCCGCCGCGCCCTGTCCGCCCTGCGCTTCAGCCCCCAGCGGCCCAGCTTCCTGTTCAGTGAGTGTCTGTCCCCCGTCCTCGTCCTGAGCGCAGGCTGGTCACCCTGGACGGGTTCACAGCTCGccgagaaacacacaaacaaaacaaactcctCACGCTTCAGTTTCCTCCTTATTTCTCGCGTCTTGCTTCGCGTCTGCATGTCAAGCCGGGTCGAATGCCTGACTGCTCTGGCCCGGAGCCCCACTTTTGCTCAACAGGGAGTGGCCGGGTCGTATGACAGCAGGGTGGTGCTGTGGGACATCGGCGGTGTGGACGGCAACTACAACTTCAAAGTCAGTCAGCTGATGATCCTGGAGACCGGCTCCACCCCACTGCACCTGAACCTGCCCCCCCTCTCGGCCGAGAGGCACTTGCTGGCCGCCTGTGACCGAGGCCTGCTCTGCTTCGACACACAGCTTGGCAAAAACCAGCTGAAGAGGAGCAGCGAGCTGGAGGTGGTGTTCCCTCTGTACAGAGAGGAGGACAACAAGAAGAACTTCCACACCATTGACGGCCTGGCCTTCCTCAACAACGACATCATCGCCTCCAAGAGCCACATGCAGGGATCCATCTACCTGTGGAGCTGGAGCCGCACGCTGGCCACCCGGCCCAACAAGCGCAGGGAGGTGGGAGCCGCGCTGCTGGCCGAGCTGCAGTGGTCCGGCACCGACCTGCCCTACCTGTCCCTCAGCACCTGCCCCGGTGAGGGGTACCTGGTGTGTGGGGACGAGAAGGGCAGCCTGTGGACCTACCACCTGACCGAGGAGCTGCTGGTCCGAGCCAGAGCTGGGAAACCCCTGCCTCCCACTCAGGTGCTGCAGTGGCCGGCCCCCGTGCTCAGAGGGGGTGGCCCTGTGGACGGCCCCTCCGTCAACAGCGTGGCCCTGGCCCCCAGGATGAAGTACCTGGTGGCCCTGACTGACAAGAACATGGTCGTGGTGTGGAGGAGAgtgtgaggaggaagaggaggagctggtGCCAGGCCAGTTTGCTGAAGCTGGATGGACTCTGCAGAGAGACTCGCACAATGTGGATCAGACACTTATTCTTATTTCGGTGTCAGTTCCTGTATTGCTCCTGACAGGACCGGCCCGTCTCAGAGTCGACAGAGGTGTTGgatttttaggttttttttaattaattttgatttgattttaaagagTGTCTCCTAGGGGGTGTGATAACCACGTCCGGGTTGTAAACAGATTTTGTTCTCGGGAGTCTGAACTCTCGGGGGAGAATCCCGTCTGTCTGGGAATCTGTAACAGGATTAAAGACCGTGGAGACTGA

Function

GO:

id name namespace
GO:0044427 obsolete chromosomal part cellular_component

KEGG:

id description
K24733 LRWD1; leucine-rich repeat and WD repeat-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191242 lncRNA downstream 17813 35722 ~ 36395 (-) True G151903
TU191240 lncRNA downstream 21397 31994 ~ 32811 (-) True G151901
TU191229 lncRNA downstream 33652 20300 ~ 20556 (-) True G151891
TU191281 lncRNA upstream 33798 95121 ~ 99670 (-) False AMCG00005399
TU191282 lncRNA upstream 33798 95121 ~ 99670 (-) False AMCG00005399
TU191313 lncRNA upstream 47075 108398 ~ 112412 (-) True AMCG00005400
TU191322 lncRNA upstream 180831 242154 ~ 332344 (-) True G151957
TU191337 lncRNA upstream 285674 346997 ~ 350322 (-) True G151970
AMCG00005408 mRNA downstream 789 42629 ~ 53419 (-) True AMCG00005408
AMCG00005409 mRNA downstream 11935 41220 ~ 42273 (-) True AMCG00005409
AMCG00005405 mRNA downstream 13178 38580 ~ 41030 (-) True AMCG00005405
AMCG00005407 mRNA upstream 1032 62355 ~ 67033 (-) True AMCG00005407
AMCG00005397 mRNA upstream 19119 80442 ~ 90383 (-) True AMCG00005397
AMCG00005399 mRNA upstream 33029 94352 ~ 99548 (-) True AMCG00005399
AMCG00005398 mRNA upstream 42807 104130 ~ 106498 (-) True AMCG00005398
AMCG00005400 mRNA upstream 49930 111253 ~ 120547 (-) False AMCG00005400
TU191268 other upstream 1298 62621 ~ 63728 (-) False AMCG00005407
TU191269 other upstream 1298 62621 ~ 63728 (-) False AMCG00005407
TU191554 other upstream 1158004 1219327 ~ 1258926 (-) False G152133
TU191607 other upstream 1310060 1371383 ~ 1371737 (-) False AMCG00005419
TU191743 other upstream 1444617 1505940 ~ 1507628 (-) True G152277

Expression Profile