RNA id: TU191269


Basic Information

Item Value
RNA id TU191269
length 556
RNA type TUCP
GC content 0.70
exon number 3
gene id AMCG00005407
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 62355 ~ 67033 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGTCGCCATGGCCGGGGAGCCGAAGCCCGTCTGCGCCTGCAAGGGAATCCGCTCCTGCCTGCTGTGTGAGGGACCCGGCAAGACGGGCAGCCGCGACACCGCGCAGcCACTGCGGTTCATCTACGAGCCCCGGTCCGGCCGGGCGGTGAGGGCGGAGGGCGGGCACCGGCACTCGTTCGAGCTCCCCGGGGTCCTGCTGCTGGAGGAGTTCGTGtcggaggaagaggaggagcggCTGGTGAGCACCATGGACCGGGACCCCTGGATGGACTCGCAGTCCGGCCGCCGGAAACAGGACTTCGGGCCCAAGGTGAACTTCAAGAAGCAGCGTGTGCGCTTGGGGGGCTTCAGCGGCCTGCCCCCCTCGAGCCGGGAGCTGGTGCAGCGCATGGAGGGGCGGCCGGGACTGGGGGGCTTCCTGCCCGTGGAGCAGTGCAACCTGGACTACTGCCCCCGGCGCGGCTCAGCCATCGACCCCCACCTGGACGACGCGTGGCTGTGGGGAGAGCGGCTGGTCACCCTGAATCTGCTGTCGGACACGGTGCTCACTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191242 lncRNA downstream 26226 35722 ~ 36395 (-) True G151903
TU191240 lncRNA downstream 29810 31994 ~ 32811 (-) True G151901
TU191229 lncRNA downstream 42065 20300 ~ 20556 (-) True G151891
TU191281 lncRNA upstream 31393 95121 ~ 99670 (-) False AMCG00005399
TU191282 lncRNA upstream 31393 95121 ~ 99670 (-) False AMCG00005399
TU191313 lncRNA upstream 44670 108398 ~ 112412 (-) True AMCG00005400
TU191322 lncRNA upstream 178426 242154 ~ 332344 (-) True G151957
TU191337 lncRNA upstream 283269 346997 ~ 350322 (-) True G151970
AMCG00005406 mRNA downstream 1298 54208 ~ 61323 (-) True AMCG00005406
AMCG00005408 mRNA downstream 9202 42629 ~ 53419 (-) True AMCG00005408
AMCG00005409 mRNA downstream 20348 41220 ~ 42273 (-) True AMCG00005409
AMCG00005405 mRNA downstream 21591 38580 ~ 41030 (-) True AMCG00005405
AMCG00005397 mRNA upstream 16714 80442 ~ 90383 (-) True AMCG00005397
AMCG00005399 mRNA upstream 30624 94352 ~ 99548 (-) True AMCG00005399
AMCG00005398 mRNA upstream 40402 104130 ~ 106498 (-) True AMCG00005398
AMCG00005400 mRNA upstream 47525 111253 ~ 120547 (-) False AMCG00005400
AMCG00005401 mRNA upstream 84307 148035 ~ 151114 (-) True AMCG00005401
TU191554 other upstream 1155599 1219327 ~ 1258926 (-) False G152133
TU191607 other upstream 1307655 1371383 ~ 1371737 (-) False AMCG00005419
TU191743 other upstream 1442212 1505940 ~ 1507628 (-) True G152277
TU191734 other upstream 1549045 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 1644955 1708683 ~ 1721202 (-) True AMCG00005461

Expression Profile