RNA id: AMCG00005408


Basic Information

Item Value
RNA id AMCG00005408
length 3021
RNA type mRNA
GC content 0.56
exon number 11
gene id AMCG00005408
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 42629 ~ 53419 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCAGACCGCGGCGCATCGGGAGACGGGCGCTGCACATGGCGGTGCCAGCAGCGCTGACAGCGGAGAGCACAGAGGCCCTGCGGTGCCCGGGAGGCTGCGGGAAATGAAGGGAGCACTGTAAATCCCtggttgttttattgtgttttcacCCCCCCCTTCTCACTACGCGCCCAGGAAGCCGCTCAGGCCTCGTCACCGCGGGACAGCAGGAGCCCCGACCCGCACAGGAGCAGCGATGCGCGGCGCGGTGGCCGGCAGGGCGCTGCAGAGGCTGGGCGCTTCTGTGGCCGCCAGCCCGGGGGGGACCCGTGTCCGGACAGGGACTGGAGCTCTGCTGCCCGCGTCCGCAGCCGGCAGCGGGGCGTCCACTCGGTCCCGGTCCACGTCCTCCATGCAGGGCTACTCGGAGCTGGCCCGGGAGAGGTCCAAAACCGTTACGTCCTTCTACAACCAGTCTGCCATCGACGTGTGCGCTGAGAAGCCCTCTGTCCGCCTCACCCCGGCCACCATGCTGTACTCGGGAAAGTCTCCGGATGGCAGCCACGTCCTGagcAGTGCCAAGTACCTGCAGAAGGAGCTGCCCGTGCGCATCGCCCACCGGATCAAGGGCTTCCGCAGCCTGCCCTTCATCATTGGCTGCAACCCCACCATCCTGCAGGTGCACGAGCTGTACATCCGTGCATATCACATGCTCAGCGACTTCCCGGCGATCACAGACCAGGAGACCGAGGCTCAGTACAGTAAGCTGGTGCAGCAGCTGCTGGACGACCACAAGGACGTGGTGACTATGCTGGCCGAGGGCTTCCGGGAGAGTCGCAAGCACATCCAGGACGAGGCCCTGATCCGCAACTTTCTGGACACGACGCTGACCTCGAGACTGGGGATCCGCATGCTGGCCACCCACCACCTGACCCTGCACCAGGACAACCCTGAGTTTGTGGGCATCATCTGCCGCCGCCTGTCCCCGAAGAAGATCATCGAGAAGTGGGTGGACTTTGCTGGccGGCTGTGTGAGCACCAGTACGGCAGCTCCCCGCGGGTGCGGATCAATGGACACGTCGCCGCGCGCTTCCCCTTCATCCCTCTCCCCCTGGACTACATCCTGCCCGAGCTGCTGAAAAACGCTATGAGaGCGACGATGGAGAGTCACCTGGACACCCCCTACAATGTGCCAGACCTGGTGGTCACCATCGCCAACAACGACACAGACTTCGTCATCAGGATCTCGGACCGGGGAGGCGGGATTCCCCATAGCATCCTGGACAAGGTGCTGGACTACCACTTCAGCACCGCGGAGGAGAGCGCGCAGGACCCCCGGCTCACCGGCCTGTTCAACACCATCACCAACAGCGGCCCACAGTCGGGGCCCATGCACGGGTTTGGCTTCGGGCTGCCCACATCACGCGCCTACGCCGAGTACCTGGGCGGCTCGCTGGCCATCCAGTCCCTGCAGGGCATCGGCACCGACGTCTACCTGCGCCTGCGCCACATCGACGGCAAGGGAGAGAGCTTCCGCATCTGAGCCACCCTGGGACCCCCCCCCAGTGCTGACTTCTCCATGAGAGCCTGCAGGACAGACCCCGGCCAGGCACCACGGGACTCCCCTCTCAGACCGCAGAGACCGATCACAGCGACCCGGGGAGGGCGCTTCTCTGCCCACTGACTCTCGGAGAGAAGCAGCAGAGACGCTCACTGTGTGGGGTTCGCTGTCCTCGGTCGACAGCATCTCAGTCTTGTATTCGTTTGGCTTCTGAATCGCAGTGCAGGCCACGGCAGCGAGAGACGGCCCTGCACAGCGACACGCGGGAGCCACTTTACTGCACAGCACGTCGAACTTCCACATGAATGACTTCAGAACACGCTGAACTACACGCACCGCACCACAGTCCTCTCGGTTCATTCAATGCTTCGTTCTGTAAGTGATCGGTGCAGCTCCGTGAAATCGATCGGAGATAGTGTTATTCACTTACGAACCGCATTCAAACATATGGGACTCGATCAGGTTGGTGAAAATCGATGTAAAACAATCACAGATCAAAAAACTAACTCTTGGATGCAGAATGAGATGTTTTTTTCAGGAGTGAGTGTTGCCTCTATACTGTGTTTATATCATTCTCTGATAATATGGGAAATCTACAAATAATATCGgcagattttgtatttaattgatatgtATTTCTGTGATGTCCTCATAGCGGAGGCATCTTTAAACGATGTCAGCTGAGAAACACCCTAAGTACGTCATCTCTGGGGAAATGGAATGATTTTGTACGTGGGttttatgatgtattttatAAAGGGTACAGATCTGTGTATTTGTGCTTGTGTGGCTCAGACCGTGGCATCCAGGGCAAACCCTGTCTCTGCCTGGTGCCGTGTTTCGCTGCTGACGGATGATGTTGCAGCACGGGGAATGTTCTGGGGGGGTGGGAACGGTATTGTGTTCAGGTTGCACAATCACAGCCGGTTGTGCATTCACAACGTTGTGGGCTGGGAACTGCAGCGAGGATCTGTACTTGGACACTGCGGTCCGTGGAGACGATAACGAGAAACGTCCAGTTCGCTATCCAGGCATTCACTGAACCAGGACAGCCCGCCGGTTTCCAGCGCTTGTTCTCCTGCCACGTCAACGCCAGAGGCCCTTCTCTCGATTTCTCTCCACGTTTCAGGAGAGCGCAGGCCAGCTTGTGAGCCACGGGCGCCCTCTGATGGACAACTCTGAAATTACATGGACAACAAAAATATGCTAATCGGTGTAAAACGTTGATGTTATCCTTTTAATTGAATCCCCCTTTGATTGCTTTTATAATTTTGCATTATGGCAGTTACTAAATGAAAACCATGATATGCTAATTCAATACAAACCTCCCTCTTGTATTATTATAGCCACATTGTGTAGCAGTATATTTTCAGTCATCATGAATTTGTACTAAcctgtttgattttatttacattgatctTTTCCTTAGCTGTATCATGTTATATAGTTCCTTTGGGCATTAAATGCTGTAAAACAAGA

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K00905 BCKDK; [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191242 lncRNA downstream 6234 35722 ~ 36395 (-) True G151903
TU191240 lncRNA downstream 9818 31994 ~ 32811 (-) True G151901
TU191229 lncRNA downstream 22073 20300 ~ 20556 (-) True G151891
TU191281 lncRNA upstream 41702 95121 ~ 99670 (-) False AMCG00005399
TU191282 lncRNA upstream 41702 95121 ~ 99670 (-) False AMCG00005399
TU191313 lncRNA upstream 54979 108398 ~ 112412 (-) True AMCG00005400
TU191322 lncRNA upstream 188735 242154 ~ 332344 (-) True G151957
TU191337 lncRNA upstream 293578 346997 ~ 350322 (-) True G151970
AMCG00005409 mRNA downstream 356 41220 ~ 42273 (-) True AMCG00005409
AMCG00005405 mRNA downstream 1599 38580 ~ 41030 (-) True AMCG00005405
AMCG00005406 mRNA upstream 789 54208 ~ 61323 (-) True AMCG00005406
AMCG00005407 mRNA upstream 8936 62355 ~ 67033 (-) True AMCG00005407
AMCG00005397 mRNA upstream 27023 80442 ~ 90383 (-) True AMCG00005397
AMCG00005399 mRNA upstream 40933 94352 ~ 99548 (-) True AMCG00005399
AMCG00005398 mRNA upstream 50711 104130 ~ 106498 (-) True AMCG00005398
TU191268 other upstream 9202 62621 ~ 63728 (-) False AMCG00005407
TU191269 other upstream 9202 62621 ~ 63728 (-) False AMCG00005407
TU191554 other upstream 1165908 1219327 ~ 1258926 (-) False G152133
TU191607 other upstream 1317964 1371383 ~ 1371737 (-) False AMCG00005419
TU191743 other upstream 1452521 1505940 ~ 1507628 (-) True G152277

Expression Profile