RNA id: AMCG00005409


Basic Information

Item Value
RNA id AMCG00005409
length 450
RNA type mRNA
GC content 0.64
exon number 4
gene id AMCG00005409
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 41220 ~ 42273 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCGGAGACGCGGCGCTGGTCTCTGTCCGTCTTCGCTTGCTGTCGGATGCGGCGCTGTGTTTGTGGAGGCAGCTGAGGGACGAGCCTGGCAGCGCAGGCAGACGTCGTGCGGCTGGGCGTGTTTTCGTGGCCGAGATCAAAAGCAACGATTGCCGTGTCACTGAGCTGTTCCGCGACGGGCGAGATGTAGGCAaatgtgtgtctgcgtgtccGCCCGGGATCAGGGCTGGAGGGCCTGAAGCCCTGAGAGGCGACTTCACTGCTGCTGGCAGAGGGGCCCGTCCGGGGCAGGCGGAGACGACGGACCCCCAGTTCTCCTCTGCTTTGTTTGTGCGTCGCTGGCGGGTGCTGCACGATGACTCCCAGGCCCGTGATCTGGTCCCTCTTACCCTGCCGCCGGCGCCTCTAGACCCTGACCGGCCCACATCTTTCTCCTGCTTCTGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191242 lncRNA downstream 4825 35722 ~ 36395 (-) True G151903
TU191240 lncRNA downstream 8409 31994 ~ 32811 (-) True G151901
TU191229 lncRNA downstream 20664 20300 ~ 20556 (-) True G151891
TU191281 lncRNA upstream 52848 95121 ~ 99670 (-) False AMCG00005399
TU191282 lncRNA upstream 52848 95121 ~ 99670 (-) False AMCG00005399
TU191313 lncRNA upstream 66125 108398 ~ 112412 (-) True AMCG00005400
TU191322 lncRNA upstream 199881 242154 ~ 332344 (-) True G151957
TU191337 lncRNA upstream 304724 346997 ~ 350322 (-) True G151970
AMCG00005405 mRNA downstream 190 38580 ~ 41030 (-) True AMCG00005405
AMCG00005408 mRNA upstream 356 42629 ~ 53419 (-) True AMCG00005408
AMCG00005406 mRNA upstream 11935 54208 ~ 61323 (-) True AMCG00005406
AMCG00005407 mRNA upstream 20082 62355 ~ 67033 (-) True AMCG00005407
AMCG00005397 mRNA upstream 38169 80442 ~ 90383 (-) True AMCG00005397
AMCG00005399 mRNA upstream 52079 94352 ~ 99548 (-) True AMCG00005399
TU191268 other upstream 20348 62621 ~ 63728 (-) False AMCG00005407
TU191269 other upstream 20348 62621 ~ 63728 (-) False AMCG00005407
TU191554 other upstream 1177054 1219327 ~ 1258926 (-) False G152133
TU191607 other upstream 1329110 1371383 ~ 1371737 (-) False AMCG00005419
TU191743 other upstream 1463667 1505940 ~ 1507628 (-) True G152277

Expression Profile