RNA id: AMCG00005422


Basic Information

Item Value
RNA id AMCG00005422
length 5567
RNA type mRNA
GC content 0.60
exon number 27
gene id AMCG00005422
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1408433 ~ 1425336 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGGTTTCCAATAGTGACAGGCggcggagagagggagagagagagagagagagagagagagagagagggggatagaGGGAAATGGCAGCGGCGGCGAGGAGCGACTGTAAATAACAGACCCCGCAATCACAAGCCCCCGGACCGCGGGCCCAGCTGCCGAGCTCCGGAGCGGGGGGCTGGTGGCCGGCGCTCCGCCCTGCTGTTCCTCCGCAGCGCTGCGGCTGCCCACCCGCTGCGGACGGAGCTCCGCGCACGACGTATTTTGCAGTCTCTGATTACTGCCGCGATTGTAGACAAGCTGTGCGTCCTCATCTTGAAGGAAGTTTCCTAATTGctgGTCCTGAGCATCCCTCGCTCTTCCCTGCATCTCTCCCAGACGGGTAAAGCTGGCCGACATGGATGAACAGAGCGTCGAGAGTATTGCAGAGGTCTTCCGCTGCTTCATCTGCATGGAGAAGCTGCGAGACGCACGGCTCTGTCCTCACTGCTCCAAACTCTGCTGCTTCAGCTGCATACGGcgctggctgaCAGAGCAGAGGGCTCAGTGTCCGCACTGCCGGGCGCCGCTGCAGCTGAGGGAGCTGGTGAACTGCCGCTGGGCAGAGGAGGTGACCCAGCAGCTGGACACGCTGCAGCTGTGCAACCTGTCGAAGCACGAGGAGAACGACAAGGACAAGTGTGAGAACCACCATGAGAAGCTCAGCGTGTTCTGCTGGACCTGCAAGAAGTGCATCTGCCACCAGTGTGCCCTGTGGGGGGGAATGCACGGTGGCCACACCTTCAAGCCGTTGGCAGAGATCTACGAGCAGCACGTGACCAAGGTGAACGAGGAGGTGGCCAAGCTGCGGCGCCGGCTCATGGAGCTCATCAGCCTGGTGCAGGAAGTGTGCCGGGCCGTGCCGGCCGCTCACCGCACCATCTCGCTTGTGTTGCAGGAGCGCAACGTGGAGGCCGTGCGGGGGGCGAAGGACGAACGCGTCCGGGAGATCCGCAACGCCGTGGAGATGATGATCGCCCGGCTGGACAACCAGCTCAAGAACAAGCTCATCACGCTCATGGGGCAGAAGACTTCACTGACGCAGGAGACGGAGCTGCTCGAGTCGCTGCTGCAGGAGGTGGAGCATCAGctgcGCTCCTGCAGTAAGAGTGAGCTGATCTCCAAGAGCCCCGAGATCCTGCTCATGTTCCAGCAGGTGCACCGCAAGCCCATGGCCTCCTTCGTCACCACGCCCGTGCCCCCGGACTTCACCAGCGAGCTCGTCCCCGCCTATGACTCCAGCACGTTCGTCTTGGCGAATTTCAGCACCCTGAGGCAGAGGGCCGACCCGGTGTACAGCCCGCCTCTGCAGATCTCCGGCCTGTGTTGGAGACTCAAGGTTTATCCTgACGGCAATGGAGTGGTGCGTGGGAACTACCTCTCGGTCTTCCTGGAGCTGTCGGCGGGACTCCCCGAGACTTCCAAGTACGAGTACCGGGTGGAGATGGTGCACCAGGCCTCCAGCGACCCCACCAAGAACATCATCCGTGAGTTCGCCTCCGACTTCGAGGTGGGCGAGTGCTGGGGCTACAATCGCTTTTTCCGCCTCGACCTGCTGGCCAGCGAGGGCTACCTCAACATGCAGAGCGACACGCTGGTGCTCAGATACCAGGTGCGCTCCCCCACGTTCTTCCAGAAGTGCAGAGACCAGTACTGGTACATCAGCCAGCTGGAAGCGGCTCAGACCAGCTACATCCAGCAGATCAACAACCTGAAGGAGAGGCTGGCCATCGAGCTCTTCCGCCGGCAGAAGTCGCGTAGCTCGTCCCCCCCCGACCGCCGGTTGTGCGCCTCGGCCTCGGACAGGGACGTGCGGCCCGGGAAGGGCGCCGTGGCCGAGGAGAGCGGCCAGGCTGGGGCTGGAGAGGTGAAGGAGgtggcggaggaggaggaggaagaggaggagcaggaggaggagaagaccCAGCAGGATGACTCCAACGACCTGTCCGACGGGGACCTGGAGGTGGACTGCCTGACCGGGGACGAAGAGGCCAATCCTCTGGATGGGAGCAGCACCTCCGGCAGCTCCACCGCCACCAGCAACACGGAGGAGAACGACATCGACGAGGAGACAATAGGAGCCGGGCGTCCCCTCACCCTGGTTGTCCTCGAGTGCCCTGTGCTGACACAGAATCTGCGTCACCGGGGCTCCGAGAGCGTCGCCTGCCAGGAGTGTCAGAGTATCTTAACGTTGCCGGGGATGTCGGGGACGTGGCTGGTTATGATTTCGGCCTTTCGAGAGTCTGGAGAGAACGATGTGGAGTACAGTGGCAACCTCGAGATGGAGGAGGGGGAGCTGCCGGAAGACGTGGCTGGGGCAGCAGGCGGGTCAAACCCTGGCGCGCGACCCCTGAGGCGCGGGGGGGCGGGCGGCCTGTCCTCGGCCACCAGCAGCAGCCTGTTGGAGATCGACCCGGTAATCCTGATTCAGCTGCTGGACCTGAAGGAGCGCGGCAGCGTGGAGTCCCTGTGGGGGCTGCAGCCGCGGCCCCCTGGCTCCCTGCTGCACAGCACGGTTCAAGCCCACTCCCGGAAGGAGCGCGAGCGCCGGCCGCAGGCAGTGCGCCGGTCAGCCCCTGATTCGGGGGTCCTGATCCGGCTCAAGGCCCAGATGGCAGAGGTGCGCAGCAAGATGTCGGACGTGAAGTGCCAGCTGGAGGCGCGGGGTGGGGCGCTGCCCGGCGCGGGGGAGTCCAGGGCTGGGCCCTCGGGGAGCCTGGTGGAGCAGGGCCCCGCCGCGGACTCAGACGCCCCGTCCTGCAGGAAGCCGAACGAACTGGACCTGCTGGGCAAGGCCCTGGCGTCGGGGCGACACTGCCGCAGCGCGTCCGGCAAGAAGGGCGTGTCCCCGAAGCAGGAGgccggggggccggggggccTGGCCCTGCGCCGCTCTGTGGACTGTGTGGACAGGGAGGCTCGAGCGCAGGGGGACGGCGAGGCGCGGGCATGCCCGGGGGACGCCGGGACCGGTGCGGAAGCCGGCCCGAAGCCCCGCACCGTGTACAGCTCCCCGCCCTGCCTGGGCAGCGCCAGCTCTGCCGACAAGCCATCGAGCTCCAAGATGGAGGAGCCGACCTACGGAGCCGCCGGCACCGACCTCCTGGGCCTCTCGGGCCTCAATGGGATCCTGCCGATAGGCAAAACCCGCCGGGTCCCCACCATGGGgGCGGGGCTGCTGACGGACGGCAGTCTGGATTGTGACCCAGAAGGGACCAGTGAGATCCGGCAGTCGCTGCTCGCCCTGTCTGAGGGAAGCGCCTCCCGGCCCGACGAAGGGCTGCTGTGCCAGAAGCAGGTGCTGCACCTCCTCCCCGGCATGAGCAGCGACTCGGAGATCGAGTGCGACACAGAGAACGAGGACGACGCCGTGGCCCTGGAGGCGGGGGACTGCCGCTACAACGCCCGGATGCTGCCCGGCACAGGGGACCAGCTGAGCTCCGACGACCTGAGCTTCACCGCCGGGGAGGCGACCGAGAGGTGATTCCCCCCCGACGCCATCGCCCCGTGCTGCTGCGGACAACGTGCCGACGGCtcccttccgcttcctgtcCGCCTGCCCCGGCGCAGAGACTCGCATGCAGCTTCCTCATCGTCACGCCCGTCGCTCAAGGTCAACGTCTGGGGGGAGAGGGGGTTGCACAGATGTATAAACGCTAAGTGTCACCGTGTCGCTCATATTGACTCTGTAGTTACGTGTGAATTCtacggggggaggggggggacaaACCTAACAAACTGTGTGGTGAGACGGTGCTCGGACACGCAGAACCACCTCACCGGAGAGGCGGCGGCGCCCGTTGATCTGCTTCCTCTCTGCTTTCAACACTAATCCCCTCTCGCCGGCACAGACTCtccttttaacctttttttcttgtaaatttAAGTGGATGACCGTGATTCTTAAGTGTGTGTGGATAGAAGTCTGCTCTGAActcgtgtgtttgttttgtttcttttccttgttttgttgttgttttgtttggctcTACCGGAGCAGAGGCGCACGTTGAGGAGTTGCAGTcggtttaatttgcatttcctCGCTGCATAACAACTGAACAGGTTGATGATCACTCGAGTCTTATTCCCGGCCCGTTTACACCATATTACAGCCTGTAGATGGACCGGGGAGGACGGCTGCATGTCTGATTTGATTGATCAGTCTGCTCCGTAATGAAACACTGGCGGTGCCGATCAAgatgcatttatgttttatggAGACGCCCGCTGAATCCATAAAGCGGGATCATCCGGCGGGAGGCGCGGGGTGCCGGGGCCTGAACGCACCGCCGCGCTCTGCCCTTAATGCGAACGAGAATCAGGAGATGTAactttgtataatttataatctAATTTATTGAGCGCTCTGTGGAGAACTACTGTGTGCATCTCCTCTGACTGAGACGAGCAGTTCAAGACGCTCTGGCTTTACTTCCCTCTTCTCACTGTTTTTCCGCTGTCTTGGGAGTGGCACAGCCCTGCCCGTCCTCCCTCTCACTGGGAACCCCCCCACCATACTGGCTGTGCTGAAGGGGACCCACGCATGCTGgcctgtttatttgtattcttaaaaGGCTCTGGCCGGGACCATGCTTTACGTGTTTACCGTCCTCCTGCGTGAGAGTCGATAACAGATCCGTCTCAGTCCTCAggacaaatgtgtttaatttaaacccCTCCCTCTCGAGTGACAGAACGCCACTAAACTGACTCTGGATTTGAAAACTAACTcgatcttttattttttctctcgtGTGGTTTTATGGTCGTCCTTGGTTTCCCTCATTCTGGAACACAAATGCGTTTTTGCTTTTACTTAGAGCTTAAACTCTCCGTTAGACACTCGGCTGTTTGCCCTGCCCACTGTAGGCTCAATGTGGCCCAATTTCTGATCCAGTCTGGGCCTCCTTCCCCGGCCTGACGCTCACAATGGGAGGTTCGGAGGCCATGGGGGGTGAAACCGGTGCATGCGGTCCCTGTGCCTCGATGTGCCTGAAATGTGCACGGCTGCTATTTGAACTagaggagaggggaaggggagagtcatgctggaaaaataataagttgAAAGTGCTCATGATTTTGAAATCTGAAGTGCTCTGTGGAAATGTAATGCATCACTGCGGTCTTTAAAAGCATTCTCCCCTCGGCCCCCGTGCTCGCACCCCTCCGAGGATGCTCTGTTCGCGCGCGCGTACATGTGGCCCGATCTCAGTGgcactgattttaattttacccAGGCCTTCATCGCTGCTGTGCGTTCGTCCCACTGGCGTGTTCAGACCCCCGCTCTGAGCCTGGCGCCCCCCCCGCAGTCACGCTGTGAGATGATTTTCTGCAGTCCCGTGTTTGTATATGTctgtaggtatgtatgtatataaatataaatctctAAGCAACTGTcagtgtttttggttttaaaatgctctGTCAGGACGTTGTTGGAACTgtgcaattgtttttgttttgtaaataactaacaaaatactaaatgaacaaataaaatgtttactttttcttgaaa

Function

GO: NA

KEGG:

id description
K10608 TRIM37, MUL; tripartite motif-containing protein 37

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191523 lncRNA upstream 154474 1245031 ~ 1253959 (+) True G152111
TU191451 lncRNA upstream 351038 1057185 ~ 1057395 (+) True G152053
TU191435 lncRNA upstream 394053 1014078 ~ 1014380 (+) True G152040
TU191346 lncRNA upstream 717497 690659 ~ 690936 (+) True G151978
TU191335 lncRNA upstream 871741 535895 ~ 536692 (+) True G151968
TU191630 lncRNA downstream 32818 1458154 ~ 1458747 (+) True G152196
TU191632 lncRNA downstream 36388 1461724 ~ 1461939 (+) True G152198
TU191670 lncRNA downstream 84166 1509502 ~ 1515952 (+) False AMCG00005434
TU191834 lncRNA downstream 504119 1929455 ~ 1946800 (+) False AMCG00005429
TU191902 lncRNA downstream 830029 2255365 ~ 2323345 (+) True G152397
AMCG00005425 mRNA upstream 1896 1403046 ~ 1406537 (+) True AMCG00005425
AMCG00005424 mRNA upstream 5732 1388688 ~ 1402701 (+) True AMCG00005424
AMCG00005413 mRNA upstream 23843 1381741 ~ 1384590 (+) True AMCG00005413
AMCG00005418 mRNA upstream 29549 1376776 ~ 1378884 (+) False AMCG00005418
AMCG00005416 mRNA upstream 48910 1342760 ~ 1359523 (+) True AMCG00005416
AMCG00005423 mRNA downstream 43840 1469176 ~ 1480171 (+) True AMCG00005423
AMCG00005437 mRNA downstream 60877 1486213 ~ 1490622 (+) True AMCG00005437
AMCG00005436 mRNA downstream 66135 1491471 ~ 1496565 (+) True AMCG00005436
AMCG00005435 mRNA downstream 71516 1496852 ~ 1506717 (+) True AMCG00005435
AMCG00005434 mRNA downstream 87867 1513203 ~ 1517580 (+) True AMCG00005434
TU191589 other upstream 29131 1376468 ~ 1379302 (+) True AMCG00005418
TU191585 other upstream 40477 1367014 ~ 1367956 (+) True G152159
TU191336 other upstream 871070 536751 ~ 537363 (+) True G151969
TU191334 other upstream 1008568 398925 ~ 399865 (+) True G151967
TU191729 other downstream 320624 1745960 ~ 1748934 (+) True G152267
TU191823 other downstream 374475 1799811 ~ 1803903 (+) True G152337
TU192049 other downstream 1078574 2503910 ~ 2510676 (+) True AMCG00005481
TU192048 other downstream 1078657 2503993 ~ 2510676 (+) False AMCG00005481
TU192155 other downstream 1419881 2845217 ~ 2849608 (+) True G152588

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005315 True 4732 mRNA 0.47 25 NC_007121.7 32809620 ~ 32851847 (-)