RNA id: AMCG00005423


Basic Information

Item Value
RNA id AMCG00005423
length 4233
RNA type mRNA
GC content 0.68
exon number 27
gene id AMCG00005423
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1469176 ~ 1480171 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCGGGGTTTCGAGTCTGACGTCAGCGCGGTGGGCGTGGCGTGAGCTGGCGAACTGGTCGCAGAGGCCCTCGGGTGTCTGTGTTAATACACACATCCATACGATGGCTCAGAGCGGAGGGGCCCCGGTGCCCTGCCCGGTGCGGCTGGGCCGGGTGATCGCCGACGGCGCGGCGGCGCAACTGCACGGGTTTGCCCTGGAGAGGAACACCCACAAGCTGGAGAAGCTGCTGAAGAGAGGCGTGGACGTGGACGTCATCAACAACCTGGGCCAGACGCCTCTCTTCTGCGCCGCTCTCCTGGGCCTCACCGGCGCCgcagagctgctgctggagtTCGGCGCCGACCCCAACCACGCGCTGCTGGACGCGGGGGGGGACCTGCGGCTGCACGACGCACAGGGACGCACCCCCGAGGACTGGGCCCAGGCGGGGGCACAGGAGCACAGCCCCCGGATGCTGAGCTTCCTGCAGCGCTGCGTGGCCCACATGCAGACGCTCACCCAGCAGAGCTCGGCCCGAGACCCGCGCCAGACCGGCGGCTCCTGCAAGGCCCTGCTGCCCTCGCCCACCCTGCTGGAGCGCCTCAAACCGGGCAGCCCTGACTACCACGTGACCAGAAGGACGAGCAGCAAGCCCCCGGCCTTGGACCTGCGGCAGTGCTTTGGCTTTGGGCAGCTGTGCGCCGCCAGGCCGAGGCAGCGCCTGGACTTCTTGGCCGGTCTGCCGCTGATCGAGGAGCGGGAGCTGCAGCAGGCCGAGTACGAGCCCCTCCTGTCACACTCTTGTGGCTCCTACATGACCATGACCAATTACAGCTGGAAGGGGTGCCGGGTGACGGTGAAGGAGCTGCAGCCCCAGGGTGCCCTGCTGCGCGGCCCTAAGGGTGGCTCTCTGGACTGGCTGATCGCAGAGCAGGAGCACTGCAGCCGGCTGCTCCACCCCcacctcctgcagctgctgggtGTCGGCGTGTCCCCGGACCTGCAGACGACACGCCTGGTGTTTGAGAGAGTGTACATCGGTTCCCTGTACAGCGTCCTGCACCTCAGGGGGGCTCTGCTGGGCGTGGCGCTGCAGGTGTGCGGTGCTCTGCTCTTCCTGCACGGCCGCAGCCTGGTGATGCGCTCGCTCTCCTCCCACGCCGTGCAGCTCGTTCGCCCCGGGGTCGCCAAGCTCACCGGGCTGCACTGCCTGGCGTGCAGTGACGGTGATGCCCGGGGGGACTCTGCTGACCCGGTGCTGCCGCTGGACCTGTACAACTGGGCCGCCCCTGAGGCCATCCGAGGGAGACCCTGCACCAGCAAGGCTGACCTCTACAGCATGTGTGCcctcctgcaggagctgttcacagACGCTGTGCCCTGGGGGGTGGCGGAGCCCCGCGCTATCAGGCACGTGGTGGAGTGCGGCCACGCCCTGCAGCCCGACCCCCGGGTGCCCACGCCCTACTACGAGCTGCTGAGGAGCGGCCTGCAGCCCCGAGCCCAGCACCGGACCCCCAGCCTGCGGGACCTGCGCCTGCAGCTGCACAGCGACGTCAAGgtgcccccccgccccactcTCGCCCCTCGCGGTGGTGCCAATGGGGGCTGTGATGTAAGGGtgctgcactctctctctcctgaccAGGGCCTGTGCCAACATGGGGGGCAGCGGTACGGGCTGTGCCCAGAGACAGAGCTGCTGTGGGGGCTGGAGACGTGGCAGGACCTGGAGCAGACTGGCCAGCGCCCGTATGTCCTGCCCCCGGACCCTGGCACCTCGGACTCGGACAGCTGTCTGGGCCCTGAGGGAACCGTGACCTGGGAcgagatggagagggagggagccccggccccggccccggcccAGAGGGACGACAGGTTTTTCGATGCGGTCAGCGCCATCATGCTGGACCTGAAGGTGTCCCAGGTGCTGGTGCAGCAGGCAGAGAACAGCCTGCTTAACGTGGAGAGGGCCCAGGCTGCCAGGGCCCGGGCCGCGAGGGCCCTGCTCGGTCAGTCCAGGGCATTGGGGCCCCTGAGGTCTCGCTACTGTCTCCCCGTAGATGAAGACAACCCCATCAGCGAGGAGACAGAGCTGTTCCTGCAGAACTATCTGCTCTCTCACTGGCAGGATGAGCCGAGTGCCGGGGAGGGGCCCAGCAGCTACAGCTCCGCCCTGGACGCCAGCTTTGCCACCCCGAGGGCCACACACAGCCAGGCAGGCAGAGGAGGTGTAGTGACAACAGGCCAGTACTGCCACAGAGAGCAGCCCTCCGTCTCCCGGCTGGACACTGAGGACAGACGTGCAGAGCCGGCACAGAGAGGATGCACTCCTGCCAGCAGCCGGCACAAGGTCCCGGGGTCTGCTGCCGCCACTAACTGGAAACGGGAGGTGTCGGAGGTGGTGGAGAGGATGGTCAGTGGGCTCTTGGGGGCAGGGGGCCGCACACCCAGCAGCCAAAGCCAGGGCACAGAGGAGAGGGTGGCCCCCGAGCAGGAGGCCCGGGGGTCCTGGAGGCAAGACCCCCACGACCCACCGCAGCGCCAGGGATCACCGCCGGCCAGCAGCACCGAGCCAGAGCGCCTGTTCAAGAGCTTCGCAGGTGTCCAGAGCGAGAGCGAGGAGGACGCCCAGTTCCTCTCCGTCAACAGGACGTTTGACCTCAGTGCTGGACGCCTGGAACGCAGGGGCCCCGCGGAGGAGGACAGCAGCTCAGAGACGGACGACACAGTGTCTCCGGCCGAGGTGTCTCTGGGCGAGGTGACGGAGGAGTTCTttaccccccgccccccagggAGTCGCACACAGgtaggggGAGCCCAGGCCACAGAGGAGAAGCCAGCTGACGGAGAGGGGCCCGCTGCCCCCCCGGGCGTCTCTTCACCGGCTGGGGGCTGCCTGCCTGACATCACTGAGCTGTCCAGCATCGCCTGTGAGGAGGACTGGTCCGGCAGACAGACACTGGGCCGACTCGCCCCGTCCACCCGTGTCAGCACGCCGCGCAGCCCAGGAGCAGCGCGCTCCCCCTCGTCCAGGCCAGTAGGGGGCGATGTGGCACCACTGCAGAGCCTACTGGACACGTCTCCCTGGAGCAGCCGAGTCACATCCGAGGCCTTCAACACGGCCCCCTCCGGCACCATCGGCATCAGCGACCCCTCAGTGTCCGGAGTCCTGCCTTCGCCCCGGCTGGGAAACGCTCACACACGCTCTGACCGCAGAGAGACGGAGGCGCCTGGGGGGGGTACATGGACTCCAGGGCCACAAGAGGAACGGGGCGGTGCCGGCGGTGCCAGGGGGGCGCACTTCAGTGACACGGACAGCACGGCAGAGAGTGACACGGCGGGGGAGTCCCCAGATGATGATGAGGTCGGCAGGGGGGCGGCGATGGTGCCAGGTGACAGAGTGGCCGTGACAGCGGCTCCTGGGGATGAGAGAGCCAAGGGCCCCGGGTGCCACGGCCCCGTTGCTTGGTCAGTGGAGGCCCCTGCTCCAGCAGACTGTCCCCAACTGGGAGaAGCCAGTCTTGTTGCAGTGCCTGAGGAGCTGAGGAGGTTGGAGCCCCCCGGGGACGAGCAGGCAGCAGGACAGGGCTGGCCAGAGGAGATGGACAGAGCTCACTCCACCCTGGACGAGGCGCTGCAGGGCATGCTGGGAGAGCGAGACAGTGATGAGCCGGCAATGAGCAGCACGGGCCCCGAGACATCGGAGAGCAAGGGCAGCGAGGGGGCGGCTCTGCGAGACGAGGACACGGCCGAGACGCGTGAGAAGCCGGGACAGCAGGGCAGCAGCGCAATGCCCGGCGAAGCAGCTGACCCGAAGGAGCAGGGCGAGGGACGCGAGCCGGCTCAGAGAGGGCCCTGGAGCCACACCGCGCCACACAGGTACCACACCCCCTGCCCGTGTCACCTGTCTGGAGCCACAGCAGGTGTTTCCAGCCGGGGAAGCAGGACTAGTGCACTTCTCTGGTGTCTCCCCCAGACGGATCATCCTGGAGCAGACGCCGACCAAGTGCCAGAGCGACCCGGGCCCGGCCCTGGCCCCGACCCCAGAACGCGCCACGGAAAGCGTGCACTAGCTCTGGCCATAGAGGCAGCGCCGGTGGGCCTGCAGCCAAACAGCtgagttttatgttttaaagtgaTTAGTTAGTTCCTGTGTATTGTAACGGGACGGGGTTCTGGTCCCGTGTGGGTGGCTCGGCTCGTGTTCCTGatttaaaggttaaataaagTTTCAGTTCAGACA

Function

GO: NA

KEGG:

id description
K17540 TEX14, SGK307; inactive serine/threonine-protein kinase TEX14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191632 lncRNA upstream 7237 1461724 ~ 1461939 (+) True G152198
TU191630 lncRNA upstream 10429 1458154 ~ 1458747 (+) True G152196
TU191523 lncRNA upstream 215217 1245031 ~ 1253959 (+) True G152111
TU191451 lncRNA upstream 411781 1057185 ~ 1057395 (+) True G152053
TU191435 lncRNA upstream 454796 1014078 ~ 1014380 (+) True G152040
TU191670 lncRNA downstream 29331 1509502 ~ 1515952 (+) False AMCG00005434
TU191834 lncRNA downstream 449284 1929455 ~ 1946800 (+) False AMCG00005429
TU191902 lncRNA downstream 775194 2255365 ~ 2323345 (+) True G152397
TU192219 lncRNA downstream 1591779 3071950 ~ 3090655 (+) True G152644
TU192220 lncRNA downstream 1591779 3071950 ~ 3090655 (+) False G152644
AMCG00005422 mRNA upstream 43840 1408433 ~ 1425336 (+) True AMCG00005422
AMCG00005425 mRNA upstream 62639 1403046 ~ 1406537 (+) True AMCG00005425
AMCG00005424 mRNA upstream 66475 1388688 ~ 1402701 (+) True AMCG00005424
AMCG00005413 mRNA upstream 84586 1381741 ~ 1384590 (+) True AMCG00005413
AMCG00005418 mRNA upstream 90292 1376776 ~ 1378884 (+) False AMCG00005418
AMCG00005437 mRNA downstream 6042 1486213 ~ 1490622 (+) True AMCG00005437
AMCG00005436 mRNA downstream 11300 1491471 ~ 1496565 (+) True AMCG00005436
AMCG00005435 mRNA downstream 16681 1496852 ~ 1506717 (+) True AMCG00005435
AMCG00005434 mRNA downstream 33032 1513203 ~ 1517580 (+) True AMCG00005434
AMCG00005432 mRNA downstream 77669 1557840 ~ 1567204 (+) True AMCG00005432
TU191589 other upstream 89874 1376468 ~ 1379302 (+) True AMCG00005418
TU191585 other upstream 101220 1367014 ~ 1367956 (+) True G152159
TU191336 other upstream 931813 536751 ~ 537363 (+) True G151969
TU191334 other upstream 1069311 398925 ~ 399865 (+) True G151967
TU191729 other downstream 265789 1745960 ~ 1748934 (+) True G152267
TU191823 other downstream 319640 1799811 ~ 1803903 (+) True G152337
TU192049 other downstream 1023739 2503910 ~ 2510676 (+) True AMCG00005481
TU192048 other downstream 1023822 2503993 ~ 2510676 (+) False AMCG00005481
TU192155 other downstream 1365046 2845217 ~ 2849608 (+) True G152588

Expression Profile