RNA id: AMCG00005424


Basic Information

Item Value
RNA id AMCG00005424
length 4767
RNA type mRNA
GC content 0.58
exon number 9
gene id AMCG00005424
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1388688 ~ 1402701 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCccggggagggagagaggaagggacgGAGGGAGAGGAGTAAACAGACTCGGAGGCGGCTGGCGCTGGCAGGACGACCCGGCCAGAGCGGAGCAAAGCGACCGGGACGACGAGCTAGGGAGACCCGGACACAGCAGGAATAATGAGCCAGAAAGCGGAGCGCCGGGGGATCCACGTGGACCAGTCTGAGCTGCTCTGCAAGAAAGGATGCGGATACTACGGAAACCCCGGCTGGCAGGGGTTCTGCTCCAAGTGCTGGCGGGAGGAGTACCAGCGGGCCCGGCAGAAGCAGATCCAGGAGGACTGGGCGCTGGCCGAGAGGCTGCAGCGCGAGGAAGAGGCTGCCTACGCCAGCAGCCAGGGGGCGCAGTCCCAGCCTTCGCTCACCACCTTCTCCAAGTTTGAGGAGAAGAAGACCAATGAGAAGACGCGCAAGGTCACCACCGTGAAGAAGTTCTTCAGCCCGTCATCGCGCACGGGCCCCAAGAAAGGTattgtgggtggggggggcaaaCTCGGTCTGTCTGCACAGCTGCCTCCAGCAACCTTTTAACCCCGTTCCCCTGCGTGCCAGGACGTCTACTGTCAGACTCCCCGTGTCTCCTCCCAGATGCTTGACCTCGTCGGTGAGATGTTTCTCCCTCAGGTTCACcgaagaatgtattttattctcatTTTAAATCCTGTAGTTCTGTGGAAAGGTTTACTAATCAGAGCTGCTTATAAGATGACTGTGAAGTCTCGGTATCCCCGAAAGGTCACTGGCGCCAGCAGGCCGGTGTTCATGGGAAACAGTCGAGTCCCCGCCCCGCATCATGGGATATGCTGGcctgggagggggggggtgctAAATGGAAGCCCAGGTTGATGGGCGTCTGCCACCCGTGCAGGTCCTCTATGCTGAACCTCCACAGTGAACCCTGACCCCTGACGAGTGCCTCTGGCTCCTTGGGTGCGGACTCTGGTCGACCCGGTCCGGTCTCGGAGTGTGGCTGCGTgctcctcccccccccctccatgcTGTCGCTTACTCTCACTTGTACACACTCCCCCCCTTCACCGCCACCCTTACCCCCACATCTGAACCCCTCTAAGCCTCATCAGTTTTCCATACAGAGTGGGCTGTCGGCACGAGACCCCCATGGCTTTGTTTTAAACACCCAACTTCCTGTTTGGGCCTCTAGCATTCCCGGAGCTTTGGCTTGAGTTAGTGTTTACAGGTTGCTGTATGTCTGGGAATAGGGCGATCTATAGGAGCTTATTTAGGATACATACAACGCTGTTGTTGAACACCGCAGCCTCTGTGAGGCGAGAGCTGACGTCAGTGTGTCGAGGCGCCGCCTGCGACCTGAAGGAACCCTGAGAGGAGACGTCCCTCACGTGCCTGGCCAGAGCGCCCAGACACTCCCTCTCTGTATGGAAACCAGCGAGGCCCCATGCACCCCCGCACCCCCCCAGGATTCGTTTGTTcgtctgttttgtttatttttcagtccGAGTAACAGTGATTCATTCGAGTCTCTTCTCATTTCTTTTGCCCCCCCAATCTCCTTTTTCTCTGTTTACTCCCACCCATCAATCTGTAtgaacataacaaaataatcaatcCTCCTGTCCTCCACCTTCTCTGCACTCATCCCTATTCCTCTCATCCCTGCTCACTCACGCCCCCCTGTCACGCCCTGtatccctcccccccacccgaCCCCCTGACCCCGTCCGGGTTCGTTACAGCACCCCCTGAGAAAGTCGGGAAGGGGCCGAGCGGGAGGGAACGCCCCGCTGAGAACCTCCTCAGGGACCTGCGGGAGATTTTTACCCCCCCCTGGGAACTGGCGTCCCCTACAGAAGAGAGCCAGGAAGCCAAGACGCCCAGTCCGTCCATCAGCCGGCAGGCAAGCCTGGAGACGGACCGCGTGTCCCGGGACTTCCAGGAATTCCTGAAGAACCTGAAGCCGGGACGCGAGATCCTCAAGCAGTGCCGCGTCTTCATCGACGGCATGGCCAACAAGAAGGACCTCAGTGCGGAGGAGCTGTCCGAGTGCGTGCAGGACTTCTACCAGAACATGGCGGACCGGCTGCATTCGCACTTCAAAGGGTCCTCGGAACGCGTGGAGCGAGTGATGGACCAGGTGGAGCGCTACATTATGACCCGGCTGTACAAGAACGTGTTCTGTCCTGAGACCACGGACGACGAGAGGAAGGACCTGGCCGTGCAGAAGCGCATCCGAGCGCTGCACTGGGTCACCATCCAGATGCTGTGTGTCCCGGTCGACGAGGAGATCCCCGAGGTGTCTGATAACGTGGTGAAGGCCATCACAGACATCATCGAGATGGACTCGAAGCACGTGCCCAAGGAGAAGCTGGGCTGCATCACGCGCTGCAGCAAGCACATCTTCAACGCCATCAAGATCACCAAGAGCGAGCCGGCGTCGGCCGACGACTTCCTGCCCACCCTGATCTACATCGTGCTGAAGGCCAACCCGCCGCGGCTGCAGTCCAACATCCAGTACGTGACGCGCTTCTGCAACCCCAGCCGGCTGATGACCGGGGAGGACGGGTACTACTTCACCAACCTGTGCTGCGCCGTGGCCTTCATTGAGAAGCTGGATGCCCAGTCTCTGAACCTGAGCCCCGAGGACTTCGAGCGCTACATGTCGGGCCAGGCGTCGCCGCGCCGGCAGGAGCCCGAGGCCTGGCCCCCGGAGCCCTGCGGCAGCCCGGCGCTCGGCCAGGTCTACCAGAGCCTGGAGCTGCTGTCGGGGCTGGGGGGCCGGCAGGAGCGCGTGCTGGAGGGGGCCCGGCGGCTGGAGAGCGACCTGATCGACTGGCGCGAGGGCGTGGAGCGTGAGGTGCGGGACATCCTGGACAGATACCCGCTGGACATCCGGCCACCTGCCTCCGCCATCGACTCCGACAACGTGGAGAACGACCGCCTGCCCCCCCCGCTGCAGCCGCAGGTCTTCGCTGGCTagaccccccgccccccaaccCCAAATGGACCGGTCCCCAGTTCCCTGTCCCGTCCCTCTCGCACCCCCCGGTCCGTGCGCTGCAGCCCGGGGGACGGTCTCAGACAGCTCGGCTCTCCTCTCCATTAAAGCAGCCCGGCAGCCTCCCTGCCTGCGGACAAGGTGCCCCCCGCGCCCCCCGGGTAACAAACGGTCGCCAGACCCCCGGCCCACGGGCCACTCTACTGTACTGAGCCGCCGGCTGAATACGCTGAGAGTCGGACATCCACCTCCAACCAAAGTCTTACACCCCGAGTCCGTGTCTGTCTGTATAACCTCATCTTCACTTTAAGCAGGTCTCCAGTCCCGTCCCCCCGTGTCCTCATAACAATGAGTGTCATAGGAGTAGTTGTGTGACTCGAGACGCGACACTCGAACACACTACGCTGGGCGGGGGGATCGCCCTTCTTCAGCCAGGGGTTAAAGACAGGTTTCGTTATTGTTTTTAGTGTCTGAACTGTATTCACAGCTGGGTGTCCGTGGGGGAAACTTCCTTTTCCTAAAGAGGCGAAAATGCAATCGACCCCAGTCCGCTCATTGTAGAGGATGATCGTTAAAGAAAACTCATCATTAATGAAGCaacttgattttaaaaagccaaCTTTCCGGGAGATGAGGTTTGTCTTCCCGCTGGGTCGTGAGGGGAGGCGTGCTGCTCGGCTCGGGCCAGGAGAGTTTGGCCCGGTTGGCACCGTGCCCCATCTGGGCCCGTCCACTCGCCTGCCCCCCCAGGCTGAGGGGCTCGTTTGCATTTTACTGGATCAGGTTTGAAATCTTCGTAGAGAAGCTGAAGTTgccttctttttttgttgttgttctttagtttttgctccttgtttgttctgttctgcTGGGCCGAGCGTTTCCTCCCTGTACTCGCGTATGAAGCATTAATTATCATGACTAACAGGAAGAGAGCTGCAGTGGGGTTCCGTGCTGAATCGCTTTTTATTTGATGTGCATTTCTGGTTTCGATTGGGAATCGGGACGGGTCTTTGAAGGCGAGCGCCCTGTCGCTACAAACACTACGAGCCCCCCACTCCGGTCCAGTGCCGCTCGGTCAGGGCCCCCCCCGTCACCGGCCCCCTGCCTGGTGCAGTGGCACTTTTAGGCCTACAGTTAAACCAAGATACCCTCCATCTCCGAGTCCAAGCACTATCCCGGGGTCTGTCAGGCAGCTGTGGATGAAATTTCTATAGATGTGTAAATCGTATTTTCATGTTTGAGTTCTGCTGTGTGGCGTCTCCTTGTGAGCTACAGAGCGGAAAGGAAGAAAACACCCGAAAACACTCCAAACCCGGCCGTGCTCTGGCCTTCTGGGGGCTGTATAGTGTGTCCCCGTCCGAGTCCCTGCTGTGTAACCCCTGGTTGTGACCCGGGTCTAGTGTGTGTGTCCGGGCAGCAGTAAAGCTCTGAAGAACACAGCGGCTCTGCGTGGGAGTCCAGAGCTTGTAAATGATCCACCTCCCGATGATCCCGTCGATCAGCGCTTAACCCCAccagctccctccctctcctctgacCGAACGGTACCGGGGCGATCCGGTCAGCCCCACCAAGAAGCACCTCCTCAGAGACCTCGTAGGAATCTAATAATGAcctaaaatgtacatttgtaacTTTACGTGTGACTTTTAAACTACGGCTTTAACACGGTTTCTTCTGTAAATGTAACTTATAGCCCTAGTGTTTTTACAGTGTCCATCCACcgtgtctgttttatttaacttcctttcaataaagaaacacaagcCTC

Function

GO: NA

KEGG:

id description
K20131 RABGEF1; Rab5 GDP/GTP exchange factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191523 lncRNA upstream 134729 1245031 ~ 1253959 (+) True G152111
TU191451 lncRNA upstream 331293 1057185 ~ 1057395 (+) True G152053
TU191435 lncRNA upstream 374308 1014078 ~ 1014380 (+) True G152040
TU191346 lncRNA upstream 697752 690659 ~ 690936 (+) True G151978
TU191335 lncRNA upstream 851996 535895 ~ 536692 (+) True G151968
TU191630 lncRNA downstream 55453 1458154 ~ 1458747 (+) True G152196
TU191632 lncRNA downstream 59023 1461724 ~ 1461939 (+) True G152198
TU191670 lncRNA downstream 106801 1509502 ~ 1515952 (+) False AMCG00005434
TU191834 lncRNA downstream 526754 1929455 ~ 1946800 (+) False AMCG00005429
TU191902 lncRNA downstream 852664 2255365 ~ 2323345 (+) True G152397
AMCG00005413 mRNA upstream 4098 1381741 ~ 1384590 (+) True AMCG00005413
AMCG00005418 mRNA upstream 9804 1376776 ~ 1378884 (+) False AMCG00005418
AMCG00005416 mRNA upstream 29165 1342760 ~ 1359523 (+) True AMCG00005416
AMCG00005412 mRNA upstream 66093 1321808 ~ 1322595 (+) True AMCG00005412
AMCG00005414 mRNA upstream 83616 1301037 ~ 1305072 (+) True AMCG00005414
AMCG00005425 mRNA downstream 345 1403046 ~ 1406537 (+) True AMCG00005425
AMCG00005422 mRNA downstream 5732 1408433 ~ 1425336 (+) True AMCG00005422
AMCG00005423 mRNA downstream 66475 1469176 ~ 1480171 (+) True AMCG00005423
AMCG00005437 mRNA downstream 83512 1486213 ~ 1490622 (+) True AMCG00005437
AMCG00005436 mRNA downstream 88770 1491471 ~ 1496565 (+) True AMCG00005436
TU191589 other upstream 9386 1376468 ~ 1379302 (+) True AMCG00005418
TU191585 other upstream 20732 1367014 ~ 1367956 (+) True G152159
TU191336 other upstream 851325 536751 ~ 537363 (+) True G151969
TU191334 other upstream 988823 398925 ~ 399865 (+) True G151967
TU191729 other downstream 343259 1745960 ~ 1748934 (+) True G152267
TU191823 other downstream 397110 1799811 ~ 1803903 (+) True G152337
TU192049 other downstream 1101209 2503910 ~ 2510676 (+) True AMCG00005481
TU192048 other downstream 1101292 2503993 ~ 2510676 (+) False AMCG00005481
TU192155 other downstream 1442516 2845217 ~ 2849608 (+) True G152588

Expression Profile