RNA id: AMCG00005427


Basic Information

Item Value
RNA id AMCG00005427
length 1776
RNA type mRNA
GC content 0.68
exon number 7
gene id AMCG00005427
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1431904 ~ 1436308 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACAGATTACAGAGCTGCATCTCAGCCCCAACGGAGTGCCAACCATCGCTGCCGAGTGGAGCTCTGGCTACAGGGCCACTGCTCAGTCCCCTTTCCCTGCAGCTGGCTAACTGCCCGTTCTCCCTGGCGGCGGGGTTGGCGCGGGCGACGGCTGATGACATCCTGCAGAACGACCTCTCGGTGTACCACGTCAGCAAGAACGCCGACAGCACCGACCCCATCCCCCAGCTGGACTCGGTGAAGGTGGCTCGGCTGGTGTTCAACAAGCTCTACGCCACATGCTGCCTGTGGCTGAAGGAGTTCCCGCGCCGCCGCCGCCCGCTGCCATACTACGAGACGTCCATCCACGCCATCAAGAACATGCGCCGCAAGATGGAAGACAAGCACATCGTGATCCCCGACTTCAACACGCTCTTCAACCTCCAGGACCAGGAGGAACAGGCATACTTCGCGGTGTTCGACGGGCACGGCGGGGTGGACGCCGCCATCTACGCCTCCAACCACCTACACGTCAACCTAGTGCGGCAGGAGATGTTCAGCCATGACCCGGGGGAGGCACTGTGCCGCGCATTCAAGCTCACCGACGAGCGCTTCGTGCAGAAGGCGGCGCGAGAGAAGCTGCGTTGCGGCACGACCGGCGTGGTGACGTTCCTGCGCGGCAACATGCTGCACGTGGCCTGGCTAGGCGACTCGCAGGTCATGCTGGTGAGGAAGGGGCAGGCGGTGGAGCTCATGAAGCCGCACAAACCCGACCGAGAGGACGAGAAGCAGCGCATTGAGGCGCTGGGCGGCTGCGTGATCTGGTTCGGTGCCTGGAGGGTCAACGGGAGCCTGTCCGTCTCGCGGGCAATCGGCGACTCGGAGCACAAGCCCTACATCTGCGGCGACGCGGACCAGAGCTCCGTCCCCCTGGATGGCACGGAGGACTACCTGATCCTCGCCTGCGACGGCTTCTACGACACGGTGAGCCCCGACGAGGCGGTGCGCGTCGTGTCCGACCACCTGCAGGAGAACAACGGCGACAGCAGCATGGTCGCCCACAAGCTGGTGGCCTCGGCCCGCGACGCCGGCTCCAGCGACAACATCACTGTCATCGTGGTGTTCCTGCGGGACCCCCGTGCCCCCCCGCccgaggagggggaggaggaggaggaggaggaggaggccctGCAGGGCGAGCTGGTCTGCCAGGACGGCGGGACGGATGGCGGCAGTGGCAAAGGGCGGGCGGGTTGGCCGCTGCAGCAGTGCTCGGCGCCGGCAGACCTGGGCTACGAAGACCGCATGGACTCCTTTACGGACAGAACAAGCCTGAGCCTGGGGCCCGAGACGCAGACGGGGAGCGCGGACTGGCTACGACTCCCCAGCCAGAACCAGCCAGCCTCCAGAACCCTGGCACCCCCCCTCACGACTACCCCTGGGCCCAGCGCAGCAAGGCGGCCCCCCCGAGAAGACGGGCTCTGCGGCTACAGACACTCCGCTGGGAACCCGAAGCCCCGCGTTCCGTCCTGTCAGCGCCCCGGGCCCACCGGACACTGGCTGGAGGCCGCCGCCGCGCTCTTCCCCCAGGAGAGGAGACCGTTGCGGAGATCCCCCTGGAGACCGGAGCCCATCCTGAGAAGAGGGGCCCACTGGGGCCTCCGAGGGGCAGGGGAGCCCTGCTCATTGCACGGCTTGCACGGCCTGCGCGGCCTGCGGGCCCCTGCCCCCTACCCCCAGCGCTGCCCCGAGCGGAGGCCCGGTTTGGCCCTGCCCCCGACCTGCCGCATCTGA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K17501 PPM1E, POPX1; protein phosphatase 1E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191612 lncRNA downstream 33512 1397341 ~ 1398392 (-) True G152178
TU191552 lncRNA downstream 96464 1257297 ~ 1335440 (-) False G152133
TU191548 lncRNA downstream 172978 1219327 ~ 1258926 (-) False G152133
TU191558 lncRNA downstream 172978 1219327 ~ 1258926 (-) True G152133
TU191494 lncRNA downstream 361248 1065459 ~ 1070656 (-) True G152085
TU191631 lncRNA upstream 21929 1458237 ~ 1458662 (-) True G152197
TU191735 lncRNA upstream 85434 1521742 ~ 1570178 (-) False G152271
TU191737 lncRNA upstream 130810 1567118 ~ 1615497 (-) True G152271
TU191799 lncRNA upstream 256441 1692749 ~ 1693555 (-) True G152320
TU191821 lncRNA upstream 309645 1745953 ~ 1752738 (-) True G152335
AMCG00005419 mRNA downstream 55431 1371342 ~ 1376473 (-) True AMCG00005419
AMCG00005417 mRNA downstream 131357 1299366 ~ 1300547 (-) True AMCG00005417
AMCG00005389 mRNA downstream 320014 1109601 ~ 1111890 (-) True AMCG00005389
AMCG00005473 mRNA downstream 369109 1059253 ~ 1062795 (-) True AMCG00005473
AMCG00005475 mRNA downstream 380496 1036096 ~ 1051408 (-) True AMCG00005475
AMCG00005428 mRNA upstream 25924 1462232 ~ 1467875 (-) True AMCG00005428
AMCG00005426 mRNA upstream 43868 1480176 ~ 1485828 (-) True AMCG00005426
AMCG00005440 mRNA upstream 81175 1517483 ~ 1523285 (-) True AMCG00005440
AMCG00005439 mRNA upstream 87352 1523660 ~ 1536868 (-) True AMCG00005439
AMCG00005438 mRNA upstream 134445 1570753 ~ 1574756 (-) True AMCG00005438
TU191607 other downstream 60167 1371383 ~ 1371737 (-) False AMCG00005419
TU191554 other downstream 172978 1219327 ~ 1258926 (-) False G152133
TU191268 other downstream 1368176 62621 ~ 63728 (-) False AMCG00005407
TU191743 other upstream 69632 1505940 ~ 1507628 (-) True G152277
TU191734 other upstream 176465 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 272375 1708683 ~ 1721202 (-) True AMCG00005461
TU191946 other upstream 761046 2197354 ~ 2329684 (-) False AMCG00005532
TU192197 other upstream 1438978 2875286 ~ 2876009 (-) False AMCG00005491

Expression Profile