RNA id: AMCG00005428


Basic Information

Item Value
RNA id AMCG00005428
length 1464
RNA type mRNA
GC content 0.65
exon number 11
gene id AMCG00005428
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1462232 ~ 1467875 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGCATCACTGCTCCTAACCCGAGGTCCCTGCCAGTGGGTTATGATGTGGAAGCAGATGGGGCCCTGCAGTTCGTATCTCTGCCACACGGGGGAGCCAGCGCGCAGAAGAGGAGCTGCTTCCTGGTCTGCAAAGATGGAGGGGCGCTGGAGCAGGTCCCGGTGCTGCGGCGGCGACACACACGCCAGATCTGCGGGACTTTGACAGCAGAGAGACCGGTGCATGACAGTGTTGTTGCGGCCATGCAGAGGGACGTGTCCAGCTTCGCCTTCGCCCCGGCCGTCAAAACCCGGCTCCTCGCCGCGGGCTTCCACTCCTCCAGGGACCTGAGTGACCTCCGACCCCTGGAGCTCAGCAAAGagGCGGGGATCTCCCAGGAGGAGGCGCTGGAGGTGCTGCAGGCCGTGCGCGGTGAGCCGGGCCAGCGGGGGGCGCAGGCCGAGGGCAGGCTGACGgcgctggagctgctgcagagggagCAGGCCTTGGGCTCCATCGTCACGTTCTGCTCCGCCCTGGACCGCACGCTGGGGGGGGGCGTCCCCATCGGCAAGACCACCGAGATCTGCGGGGCGCCCGGGGTGGGCAAGACACAGCTGTGtATCCAGCTGGCCGTGGACGTGCAGATCCCCCTGTGTTTCGGGGGTCTGGGTGGGCAGGCGGTGTTCCTGGACACGGAGGGCAGCTTCCTGGTGCAGCGGGCGGTGGATGTGGCGGAGGCGGCCGTGCAGCACTGCGCACTCCTGGCAGAGGACGCAGAGCAGCAAGACGCCCTGCAGCGGTTCACCGTGGACAACATCCTCTCGCAGCTCTTCGTCTTCCGATGCCACGACTACGTGGAGCTGCTGGCACAGGCCTACCTCCTGCCCGACTTCCTGTCCCAGCACCCCGAGGTGCGCCTGGTGGTGATCGACAGCATCGCCTTCCCGTTCCGCCACGACTTCGAGGACCTGTCCCTGCGCACGCGCCTCTTGAACGGCCTGGCGCAGCAGCTCATTCAGATGGCCACCCAGCGCGGCGTGGCGGTAGCTCTGACCAATCAGATGACCACGAAAGTTGGGAACGGCCAGTCCATGCTTGTGCCTGCTTTAGGTGAAAGCTGGGGCCATGCTGCCACCCAGAGACTCATCCTGCACTGGGAGGGGCAGCACAGACTGGCGTCGCTGTACAAGTCTCCCAGCCAGAGAGAGGCCACCGTGCCGTACCACATCACGGCGGGCTGTGAGCGCAGCGGAGACTCGGTTTGTGCGCAGTTAACAGAGCTGGAGCACAATGGGGACCTCGCTCCTGTCACGGTCCCGCAGACGGACACTCAGGACACACGGTCCTGTCCTGCGCCTGTCCCCCTGGACCGACTCCTGCTGGGCGCTGAGGTCGCCCGCCTCATGTCGCTACTCTGTCAAGTGACTCCCATAGGTGCTTCAATGCTCAGCTCCTCCATTGTCTACTCACATCTCTATTAA

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
K10870 RAD51L2, RAD51C; RAD51-like protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191631 lncRNA downstream 3570 1458237 ~ 1458662 (-) True G152197
TU191612 lncRNA downstream 63840 1397341 ~ 1398392 (-) True G152178
TU191552 lncRNA downstream 126792 1257297 ~ 1335440 (-) False G152133
TU191548 lncRNA downstream 203306 1219327 ~ 1258926 (-) False G152133
TU191558 lncRNA downstream 203306 1219327 ~ 1258926 (-) True G152133
TU191735 lncRNA upstream 53867 1521742 ~ 1570178 (-) False G152271
TU191737 lncRNA upstream 99243 1567118 ~ 1615497 (-) True G152271
TU191799 lncRNA upstream 224874 1692749 ~ 1693555 (-) True G152320
TU191821 lncRNA upstream 278078 1745953 ~ 1752738 (-) True G152335
TU191837 lncRNA upstream 473148 1941023 ~ 1946800 (-) True G152344
AMCG00005427 mRNA downstream 25924 1431904 ~ 1436308 (-) True AMCG00005427
AMCG00005419 mRNA downstream 85759 1371342 ~ 1376473 (-) True AMCG00005419
AMCG00005417 mRNA downstream 161685 1299366 ~ 1300547 (-) True AMCG00005417
AMCG00005389 mRNA downstream 350342 1109601 ~ 1111890 (-) True AMCG00005389
AMCG00005473 mRNA downstream 399437 1059253 ~ 1062795 (-) True AMCG00005473
AMCG00005426 mRNA upstream 12301 1480176 ~ 1485828 (-) True AMCG00005426
AMCG00005440 mRNA upstream 49608 1517483 ~ 1523285 (-) True AMCG00005440
AMCG00005439 mRNA upstream 55785 1523660 ~ 1536868 (-) True AMCG00005439
AMCG00005438 mRNA upstream 102878 1570753 ~ 1574756 (-) True AMCG00005438
AMCG00005445 mRNA upstream 167870 1635745 ~ 1637496 (-) True AMCG00005445
TU191607 other downstream 90495 1371383 ~ 1371737 (-) False AMCG00005419
TU191554 other downstream 203306 1219327 ~ 1258926 (-) False G152133
TU191268 other downstream 1398504 62621 ~ 63728 (-) False AMCG00005407
TU191743 other upstream 38065 1505940 ~ 1507628 (-) True G152277
TU191734 other upstream 144898 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 240808 1708683 ~ 1721202 (-) True AMCG00005461
TU191946 other upstream 729479 2197354 ~ 2329684 (-) False AMCG00005532
TU192197 other upstream 1407411 2875286 ~ 2876009 (-) False AMCG00005491

Expression Profile