RNA id: AMCG00005431


Basic Information

Item Value
RNA id AMCG00005431
length 1203
RNA type mRNA
GC content 0.57
exon number 8
gene id AMCG00005431
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1949221 ~ 1956060 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGATGGAAGTGAAAGTAAGCGCCAGCAGCCCTGCCGTGTTGCGCTGTTACACTGTAACTATTGATTCAGACAGGAGTGCGGACTGCGGCTGCGCAGACGGGAAGCAGGTGAAACGGCTCCATTTATCACTGGACTTCTTGGAGGAGAAACTGATCTAATGTGCTGTAATATTGAGTAGAGAAAGCAGGAATAACTCCAGACGTCACATCACGGCTATGAAGCTCCGGAGAGGAAGAGGCCGGTGACATGGGGAGGAAATTACCCGGCAGGCTGAGCGCCAAAAGCCACCACAAAACCAGCGCCCACTCAGTAAAGGGCAAGAcaaggaagaagaaaaggaagaaggTGGCCGAGAGACGAGATGAGGGTGAGGAGCAGCCAGAGGCCCAGCCGGTTAGTCCGCTGGTCTACGACCCCCAGGTGGCGCTGCGAGAGCTGATGGCCCGGCACCAGAAGCCTACAGACGCAGAGGGGCTGCAGAGCATCAGGGCCCAGCAGTACGAATATGAGAGCACGAGGGCGAAGAGCCAGCCGGTCGCGGTGCGGATGGGTCTCTCCAGGAGGATCTGCCGTTTCGAGCTGCCGATGGACATCAGGGAGCTGGAGGTGCTCCATCCCCAGGACTACCTGCGCAGGCACTGCATCGTGtgcaggaggaggagcagcCACTACAGGAAGGCCTTCGACAAGTtcgacagagacagagacgggCTGCTCTCCTTCAGGgaaATGGAGCGCGGGCTGAGGGACGTCTACGGGGACAGGCTCGGTACTGAGCGCGTGCAGCAACTGACCCAGCTGGTCCTGGCAGACAGCAGCACGCAGTTCGACGGCTCCCTCTTCTGCGCCCTCTGCGCCCTCTCCGAGCGCCTCTTCTACTCCTCCTTTGTGACGGAAGACACGGAGGCCCCGGAGAACGGAGAGAGGGATCCCCTGGAGCAGGCGGACTTTGGCTCCTTGCTGTCCAAATTCAGGAGCTGCAACATCCAGCCCAGTATGCGCACCCTGCTGTCCCTACTATAGACCAGGCCGGATCCTTCGGGTGTTGGTCCTTGGTACTCAATCTGTTGCTCGATTCTCATGCATTATATCTCCCCTCTAGTGTGTCAAACTCTCCGAAGGCTAGTAGGAATCCATTCAAAGAAACCCTAGCAGAAAACCTACTTTTCCTGTAATTAATAAAACCTCTCTGCATCACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191837 lncRNA downstream 2421 1941023 ~ 1946800 (-) True G152344
TU191821 lncRNA downstream 196483 1745953 ~ 1752738 (-) True G152335
TU191799 lncRNA downstream 255666 1692749 ~ 1693555 (-) True G152320
TU191737 lncRNA downstream 333724 1567118 ~ 1615497 (-) True G152271
TU191735 lncRNA downstream 379043 1521742 ~ 1570178 (-) False G152271
TU191933 lncRNA upstream 211544 2167604 ~ 2175954 (-) True G152424
TU191973 lncRNA upstream 338773 2294833 ~ 2300752 (-) False G152452
TU191974 lncRNA upstream 338773 2294833 ~ 2318672 (-) True G152452
TU191989 lncRNA upstream 450465 2406525 ~ 2407385 (-) False AMCG00005517
TU192001 lncRNA upstream 459012 2415072 ~ 2445097 (-) False G152473
AMCG00005421 mRNA downstream 92016 1839567 ~ 1857205 (-) True AMCG00005421
AMCG00005420 mRNA downstream 141141 1802917 ~ 1808080 (-) True AMCG00005420
AMCG00005462 mRNA downstream 174770 1754913 ~ 1774451 (-) True AMCG00005462
AMCG00005461 mRNA downstream 225721 1708687 ~ 1723500 (-) False AMCG00005461
AMCG00005460 mRNA downstream 241435 1697277 ~ 1707786 (-) True AMCG00005460
AMCG00005488 mRNA upstream 101922 2057982 ~ 2059253 (-) True AMCG00005488
AMCG00005489 mRNA upstream 114305 2070365 ~ 2073296 (-) True AMCG00005489
AMCG00005533 mRNA upstream 261649 2217709 ~ 2222776 (-) True AMCG00005533
AMCG00005532 mRNA upstream 283563 2239623 ~ 2271323 (-) True AMCG00005532
AMCG00005521 mRNA upstream 328384 2284444 ~ 2300854 (-) True AMCG00005521
TU191793 other downstream 228019 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 333724 1612773 ~ 1615497 (-) False G152271
TU191743 other downstream 441593 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 577484 1371383 ~ 1371737 (-) False AMCG00005419
TU191554 other downstream 690295 1219327 ~ 1258926 (-) False G152133
TU191946 other upstream 241294 2197354 ~ 2329684 (-) False AMCG00005532
TU192197 other upstream 919226 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 1115800 3071860 ~ 3090714 (-) False G152645
TU192573 other upstream 2332605 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 3344709 5300769 ~ 5302198 (-) True G153130

Expression Profile