RNA id: AMCG00005434


Basic Information

Item Value
RNA id AMCG00005434
length 2211
RNA type mRNA
GC content 0.59
exon number 3
gene id AMCG00005434
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1509502 ~ 1517580 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCATGCAGTGTTTGTGCCACCAGCCCATCCTGGACTCTTCTGTCCTTCACTCTCCGTGGTGTGGATGTCCTTGAGTCCCCCGTGCTCCAGGTCAGCTCTAAACCGGGCACTGTGTGTGTACGtttgtgcgtctgtgtctgcaggtgtgtgccgccccccccccgccccaccacGGCCCTCACCTGTGTGCTGCGGTGCTTCCCCTGCGAGCCGTCCTGGGCCGGCAGCCCCTTCCCgcaccgcccccccaccccgcccaTGGTCAGGATGACGCGCTCCAAGACCTTCCAGGCCTACCTGCCCAGCTGCCACCGCACCTACAGCTGCATCCACTGCCGGGCGCACCTGGCCAACCACGACGAGCTCATCTCCAAGGAGCATGCATTTGAGAGCAGTCAGAAGTACAAGGAGGGCAAGTTCATCATCGAGCTGGCTCACATGATCAAGGACAACGGCTGGGACTGAGTGAGGCACGCCCAGAGGGgccggggggtgggggagggacgGGAGCGGGTGACTGTGTGCCCACCTGCCCGCCTCCCTCCCCCGCTGTCCGCTCTCGCCTGCTCTCgcccacactgtcactgcccTCGCTCTGACACACGCGCACCGCttggcagtgttgctgtgtgtgtctgcagcgggatggggggcagggggtggtTTCAGGACTGCAGGCCCTcgcctcccctcccctctctacACACCCGGCAGCTGCAGGAGTGGGACTGCGGGGGGGACCGAGGGGAGCTGGGGGCgggggcacacacacacacaccctctaaAGAATGCAGGTGTTGCCCCCTCTCACTAACACCAACAGAAAGCGCTTCAGACGATGCCCCCCCACTGTGCCCAGATGTGGTGCCAAGGCTGTGAGGTCAGAGGGCCCGGTGCGCAGAAGGCCCCAAATCGGGGCTCTAGACTCCGGGTCCTGGAGAGCTGTGTGGGGCCCTCTGGTCATCTTTCTCTCGGGTCAATAGTGTGCACAGTGCAGCCCCACCATTGGCTAGTGTAGATCTTTAGCTGCAAATCAAAGATGGTTAGAAACCCCTGAGGCCTGGGGGGCCACTGCACTGCACCAGGGCTCCCCAGGACCACACCTCACCTCAGGGCATTTGTGGTCCACGGGATGTCCCAGCTGAGGGTGGGTTTGTTTTCATCCCCCTAATCCTGAAACTAAGGCGAATGAGAGGCGACTGTGCCCTGACGGTTGTGGTTTTCCGTGGCCGGGTGCTggtccagcccagtccagcccGGTGGTTTCAGACTCCACTCTTCGGGGGGGCAGTGCTCTTGTATTGTTACggatgttttggtttatttgtttcgTTCGGTTCGCATTTTGTTTTAACCGTCAGCTGCTTAAAACACTGTAATGTTTGTCCTGTTCAGCTAATTAGTGACCCTCAGAGTGTGGAGGGTGACCCCCCTGCCGTACTGGCGCTGGAGTTAAGTGACCAGTGAGCAAAGGGGGCCCGGTTCTGTGCAGAGAAGGCCCCCCCGTGTGTCTGAAGCGCTTTCTCAACCTGACATGTCTTGTGTTGACTCTGTCGATCTGCTACACTGCCTCTCAGCAGCTTCACACACCGCACGCTGTTGTCAGTCCAAACATCgacaaccccaaccccaaccacAGAACCTGCTAGGCCCAGACTCTGTCACTGGATCCCCTGGTAGCCACGGCGCCCGACTGGCAGTGGAGAGAGCCAGTCGCACGGTTGCCGTAAAACCCCGGCACAACCAAAGAACCCGCCCACCTGTCTGCGATTGGCCGACCAGACAAAACTAATTGCTAATTGTGCTTTGGACAAAGTGATGCGATCGGAGGATTGTGACTGGCTGAACGCCGCCCTGGCGGACGGCACTTTCTCTCCGGGAGATGGCGCTCTGTCCGCTGTTGTACTCCACAGATATATATTCACTCTGAACGTGAACGCTGTGTTACGGTATATCACACCTGTAAATAGTCATTATTTAATGtctcttgttgttttgtattaatttattgttttggtaAATGCCGTGCTCTTGCTGTCGCCATCCCcccatggtggtggtggtgggggggctgtgTATTTGCTACTTTTTTACAATTTGAAACCGTCTCAATTTACGGTCCTTTGTGAAGGACGGCGAGGCGATGACTGTGATACTGGAGCCTCATCAATAAAGATTCTCGTGCTGTCGAACCCTCAGTCCGGCCTCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191632 lncRNA upstream 51264 1461724 ~ 1461939 (+) True G152198
TU191630 lncRNA upstream 54456 1458154 ~ 1458747 (+) True G152196
TU191523 lncRNA upstream 259244 1245031 ~ 1253959 (+) True G152111
TU191451 lncRNA upstream 455808 1057185 ~ 1057395 (+) True G152053
TU191435 lncRNA upstream 498823 1014078 ~ 1014380 (+) True G152040
TU191834 lncRNA downstream 411875 1929455 ~ 1946800 (+) False AMCG00005429
TU191902 lncRNA downstream 737785 2255365 ~ 2323345 (+) True G152397
TU192219 lncRNA downstream 1554370 3071950 ~ 3090655 (+) True G152644
TU192220 lncRNA downstream 1554370 3071950 ~ 3090655 (+) False G152644
TU192232 lncRNA downstream 1666241 3183821 ~ 3185332 (+) False G152655
AMCG00005435 mRNA upstream 6486 1496852 ~ 1506717 (+) True AMCG00005435
AMCG00005436 mRNA upstream 16638 1491471 ~ 1496565 (+) True AMCG00005436
AMCG00005437 mRNA upstream 22581 1486213 ~ 1490622 (+) True AMCG00005437
AMCG00005423 mRNA upstream 33032 1469176 ~ 1480171 (+) True AMCG00005423
AMCG00005422 mRNA upstream 87867 1408433 ~ 1425336 (+) True AMCG00005422
AMCG00005432 mRNA downstream 40260 1557840 ~ 1567204 (+) True AMCG00005432
AMCG00005433 mRNA downstream 56058 1573638 ~ 1578641 (+) True AMCG00005433
AMCG00005444 mRNA downstream 62250 1579830 ~ 1584712 (+) True AMCG00005444
AMCG00005443 mRNA downstream 69831 1587411 ~ 1597651 (+) True AMCG00005443
AMCG00005442 mRNA downstream 80945 1598525 ~ 1613076 (+) True AMCG00005442
TU191589 other upstream 133901 1376468 ~ 1379302 (+) True AMCG00005418
TU191585 other upstream 145247 1367014 ~ 1367956 (+) True G152159
TU191336 other upstream 975840 536751 ~ 537363 (+) True G151969
TU191334 other upstream 1113338 398925 ~ 399865 (+) True G151967
TU191729 other downstream 228380 1745960 ~ 1748934 (+) True G152267
TU191823 other downstream 282231 1799811 ~ 1803903 (+) True G152337
TU192049 other downstream 986330 2503910 ~ 2510676 (+) True AMCG00005481
TU192048 other downstream 986413 2503993 ~ 2510676 (+) False AMCG00005481
TU192155 other downstream 1327637 2845217 ~ 2849608 (+) True G152588

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016816 False 805 mRNA 0.54 5 NC_007126.7 16897554 ~ 16914645 (+)
grasscarp (Ctenopharyngodon idella) TU7890 True 1040 TUCP 0.44 2 CI01000000 11244457 ~ 11245633 (+)
grasscarp (Ctenopharyngodon idella) CI01000053_02225226_02226481.mRNA False 432 mRNA 0.57 3 CI01000053 2225210 ~ 2226481 (-)
tiger barb (Puntius tetrazona) TU155356 False 2666 TUCP 0.46 5 NC_056713.1 10093655 ~ 10110441 (+)
mexican tetra (Astyanax mexicanus) TU7890 True 4033 TUCP 0.47 5 NC_035897.1 23878152 ~ 23907474 (+)