RNA id: TU191670


Basic Information

Item Value
RNA id TU191670
length 817
lncRNA type sense_over
GC content 0.64
exon number 4
gene id AMCG00005434
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1509502 ~ 1517580 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gggagagagagagagagagagagagagagagagagagagagagagagagagagttggcaTCGAGAGGAATGCGAAGGATTTGCGCTCCATAAAGTTGGCATTCCCAGGAGGGGAAAGCACAGCTGCTGACCAGcgcatacattttatttttttaattccaaggtgtgtgccgccccccccccgccccaccacGGCCCTCACCTGTGTGCTGCGGTGCTTCCCCTGCGAGCCGTCCTGGGCCGGCAGCCCCTTCCCgcaccgcccccccaccccgcccaTGGTCAGGATGACGCGCTCCAAGACCTTCCAGGCCTACCTGCCCAGCTGCCACCGCACCTACAGCTGCATCCACTGCCGGGCGCACCTGGCCAACCACGACGAGCTCATCTCCAAGGGTGAACGTGGGCTGTGGGCCGGCGGAGGAGAGGGTGCTGCTGACTGGGCTTCACGCAGTGGCAGATATCTACTGTGAGAACTGCAAAACCACGCTGGGCTGGAAATACGAGCATGCATTTGAGAGCAGTCAGAAGTACAAGGAGGGCAAGTTCATCATCGAGCTGGCTCACATGATCAAGGACAACGGCTGGGACTGAGTGAGGCACGCCCAGAGGGgccggggggtgggggagggacgGGAGCGGGTGACTGTGTGCCCACCTGCCCGCCTCCCTCCCCCGCTGTCCGCTCTCGCCTGCTCTCgcccacactgtcactgcccTCGCTCTGACACACGCGCACCGCttggctgtgggggggggggggtacttGCTGCTGTCCCTGTAGGTGGGGCAGTGCCGGGCTTTGTGCCCTCCCAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191632 lncRNA upstream 47563 1461724 ~ 1461939 (+) True G152198
TU191630 lncRNA upstream 50755 1458154 ~ 1458747 (+) True G152196
TU191523 lncRNA upstream 255543 1245031 ~ 1253959 (+) True G152111
TU191451 lncRNA upstream 452107 1057185 ~ 1057395 (+) True G152053
TU191435 lncRNA upstream 495122 1014078 ~ 1014380 (+) True G152040
TU191834 lncRNA downstream 413503 1929455 ~ 1946800 (+) False AMCG00005429
TU191902 lncRNA downstream 739413 2255365 ~ 2323345 (+) True G152397
TU192219 lncRNA downstream 1555998 3071950 ~ 3090655 (+) True G152644
TU192220 lncRNA downstream 1555998 3071950 ~ 3090655 (+) False G152644
TU192232 lncRNA downstream 1667869 3183821 ~ 3185332 (+) False G152655
AMCG00005435 mRNA upstream 2785 1496852 ~ 1506717 (+) True AMCG00005435
AMCG00005436 mRNA upstream 12937 1491471 ~ 1496565 (+) True AMCG00005436
AMCG00005437 mRNA upstream 18880 1486213 ~ 1490622 (+) True AMCG00005437
AMCG00005423 mRNA upstream 29331 1469176 ~ 1480171 (+) True AMCG00005423
AMCG00005422 mRNA upstream 84166 1408433 ~ 1425336 (+) True AMCG00005422
AMCG00005432 mRNA downstream 41888 1557840 ~ 1567204 (+) True AMCG00005432
AMCG00005433 mRNA downstream 57686 1573638 ~ 1578641 (+) True AMCG00005433
AMCG00005444 mRNA downstream 63878 1579830 ~ 1584712 (+) True AMCG00005444
AMCG00005443 mRNA downstream 71459 1587411 ~ 1597651 (+) True AMCG00005443
AMCG00005442 mRNA downstream 82573 1598525 ~ 1613076 (+) True AMCG00005442
TU191589 other upstream 130200 1376468 ~ 1379302 (+) True AMCG00005418
TU191585 other upstream 141546 1367014 ~ 1367956 (+) True G152159
TU191336 other upstream 972139 536751 ~ 537363 (+) True G151969
TU191334 other upstream 1109637 398925 ~ 399865 (+) True G151967
TU191729 other downstream 230008 1745960 ~ 1748934 (+) True G152267
TU191823 other downstream 283859 1799811 ~ 1803903 (+) True G152337
TU192049 other downstream 987958 2503910 ~ 2510676 (+) True AMCG00005481
TU192048 other downstream 988041 2503993 ~ 2510676 (+) False AMCG00005481
TU192155 other downstream 1329265 2845217 ~ 2849608 (+) True G152588

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU26819 True 202 lncRNA 0.40 1 CI01000003 2126966 ~ 2127167 (-)
eurasian perch (Perca fluviatilis) TU26819 True 3886 lncRNA 0.45 4 NC_053113.1 26320942 ~ 26334687 (-)
striped catfish (Pangasianodon hypophthalmus) TU262127 True 3130 lncRNA 0.43 3 NC_047608.1 6423580 ~ 6441162 (+)
tiger barb (Puntius tetrazona) TU262127 False 1715 TUCP 0.45 4 NW_025047826.1 419793 ~ 422947 (+)
mexican tetra (Astyanax mexicanus) TU262127 True 434 lncRNA 0.42 1 NC_035918.1 27324406 ~ 27324839 (-)