RNA id: AMCG00005435


Basic Information

Item Value
RNA id AMCG00005435
length 3957
RNA type mRNA
GC content 0.57
exon number 11
gene id AMCG00005435
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1496852 ~ 1506717 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTATTTGGTGGGTGGGCAGTTTTAATCAGTAATTGGACGAAGCTGACCGGTGATCTGAGTCCCCGGCTCTCACGGGGCAAGGGTGTGATATGGGCTTCACAAACACGGTGGACAGAAACTGTACTTGAAGGACAGAAGAACAGGCACAGGCATGCATTGCTTCACACACGTGGGCGGCGGGGCGAGGCTGGCGGGGCTGCAGGTTGGTGTGCCAGGAATCCGTCTTCACAAAGCACAGACTGCAGGCTGAGTGCCGTCTCGTTCATCCAGGCAGCTCCTGACTGATCGTCCTGGGGAGCTGAGCATGACCTTGACGGACCATCACAAACAGCTGAGGCGGTGTGTGTGGCAGCTCCCCTGCCAGATAGCAGTTAATTCGGTTTCTACACCCATTTAAATCATCCCACTGCCTAGACACTCCTCCACAGGTCTTTCACACTCCTCCACACATGCACGTGTACAACATTGTGCAAAGCGTCTCTGATCCAGCTGCGGTTGTCATTGAGGGTTTAAATTGACTATTGGTGCTATCAATGCAGAGCCATATTCCAGGAACTGGAATAACGCGTGTGTCATTGATTTTACAGAGCCTATATGATCGCCTATGAAACGCATGCATGCCCTGCAGTGCGGCGCTGCGGAAGTCTGGCCGGTGCTCTGAGCGCGTTTGTCTGATAGGAAGGCGACGTCACCGTGACGCGGGAGGGAGGCAGACCCTGCACTGGGACCATCTGTTCGGCACAGGAAAGCGAGCAATAGGCTTACAGAGCTGTGAGTCTAATTTACCGCGGCCATTCCTGTGTGTAAGGATCTTGGCTGGTGTGGGGCCTTTACCGCTGCCACCGAGGAGCGGTGAACATCCAGCCCGAAACGCAGCGGCCGGAGCCGGGCAGGGCTGTGTTGTTCCTCGGGCAGGACGCGGGTCTGAGCTGCGCATGCGCACGGCCGCAGCTGCTCCTTGAGCCGGGTTTccagcgcagcgcagcgcagcgccGAGGCGAGCCGGGACGGAGGGCAGGAGAGCCCGGGGCAGCAGGCGAGCTGGACAGGGTAGACGGAAGCAACACGGGAGGCAGGGACGTCAGGGGCATCAGCTCTGTCAGCATCACAGGACATTGTTCTGAAATCTGCAGCTAGCGAGCGACAGACGGACAGAGCTGCGCACCATATCTGCGCAGCTGCCGGCGCCTGTCTGTGTCTCCGTGTCGGTCGCTGCTGGGTGTCTGTCTGCTTACCGGGGAACAGAGATGTGTGCGACGGTATACGTGCTGTCCACCCTGGGGGGATACGTCCTCGCCTCCGCCTTGCTGCTCAAGTGCCCGTCGCTGCTGCACCGGAGGAAGCGGGAGGCTTTCCGCAGCCGACACATCTCGCACCGCGGCGGAGCTGGGGAGAACCTGGAGAACACCATGACTGCCTTCCGACATGCCGTGGACCTGGGCACCGACATGCTGGAGCTGGACTGTCACCTGACCAGGGACAAGCAGGTGGTGGTGTCGCATGACTCCAACCTGAAGAGGCTGACGGGGGTCTGCACCAACATCTCCGACCTGCCGTACGCCGAGCTGCCCTCCTACCTGTGCAAACTGGACGTGTCCTTCCAGAGAGAGTGCTGCTGCGAGGGCGGGGAGGACAAGCGCTTCCCCCTGCTGCAGGACGTGTTCCAGGCCTTCCCCACCACGCCCATCAACGTGGACATCAAGGTCAACGACGACGCGCTCATCAGGAAGGTGTCCGAGCTGGTGACCAAGTTCGACCGGGAGGATCTGACGGTCTGGGGCAACGCCAGCAACCAGATCGTCAGCCCGGGACACCAGGCTCCGTCCTCGGGGTCGGCCCCCCAGATCGGCGGACCCCAGcagatgtgtAACCCGCGAATCCCGATCCTGTTCAGCCTGAAGAGGGTCCTGCTGTTAGTGGGGCTGTTCTACACTGGCCTGCTGCCCTTCGTGCCCCTGAAGGAGCAGTTCCTGGAGATCCCCATGCCCTCCATCATCACCAAgcTGAAAGACCCCCGTCGGATGAGCAGGAGTCAGCGGTTCATCACCTGGTTGGCCGACACGCTGCTGATGAGGAAGGCTCTGTTTGACCACCTGACGGCCCGTGGCATACAGGTGTATGTGTGGGTGCTGAACGACGAGGAGGACTTCCAGAGGGCCTTCGCGCTGGGCGCCACAGGCGTCATGACCGACTACCCCACCAAGCTGAAGGAGTTCATCGAGAAGAACGGGCACAGCTAGGCCCCGCCCCGTCCTGCCCCGCAACACCCCCCCAGCCCAGAACCTCCTTCATCCGTCTCCGTGGTGCGACCCGGTGGCCCGACAGACAGCCGCCCGTGTCTGAACTTCACCAGCAGTGTGTTAGCCTGGGCAGACACGGGGGCGACCGGTCTCCACCACAGCCCGACTGGATCAGTGTTTTGCCTCCATTGGTCTAAATAACGAACTGTGTGGTGGACGACAGGACTGAGTGCCCCCCCTGCCAGCGCCATCTTTCCCCATGTGCCCAGCAAAAAAGGGCCAGACTGCCCAAGATTCCcgagtgtatatacatgtatatagtcATGCTCGCCACAGTACCGCTGCTGTGGGGTTATCTGGCCCTGTCCATAACCGCCAACCTAGAGTCTTAACAGGGACCAGGGCTGGTCTCCAGGGCTGTCCAAGGCTGTTTATTTGGGTTTTTTTCCAAGATGAGCACAAGGTGGAGTTTGAAAAGCATCTGAGAGGTTTCCTAGGACCCCCAGATCCTCCACACGGACATCATCGTCGGCACCGCGGTGAAGAGCGCTGTGTTAATCTGGGAGCAGACGGGGGAGCCCCCCAGCAGAGCAACACACACCCCGCAGGAAGCCCAGGCGACTCAGATCGGACACTGTGAAGGGACAGACGTGATGTAGTGAAATGCAGGCCGTTTGTGAGGATTAGAGGATTAGAGGAGTGACGCTGTGTGTAAGAGCTGGGGGGCGCATAGGGCAGATCAGAGTTGGGGGGGGCAGGATTGCGGGTAACCGGCAACGAAGGGGCGTCCGGGGTGACATCGCTGTGAGTAGAGACTCCGGTTGTGTGTCTGGTGTTTCAGTGTCTCACGTCATTGTTCTTCAtctgctttttaattgtttcacgttgtgttttaaatgaaagtatttGAAAGATCGCAGGTCTGAGTTctgtcttgttgttgttgttgtggttggttttattttttaaatccctatTTTAAGAAGTAGTTTAACCGTTTGCTGCAGACTGTTAAACTCAAGTGCATTCAAAATATTGGATACTTCTCTGTGGAGTCGTGTAGGCTGAGGTTCAGAGCCAAGATGTACAATACAGGTGactacataatgtgtgtgtgcgtgtgtgtgcatgtgtgactcagtgagagtgtgtgtgtgcgattgTGCAGGTTTTCTATTGCTCAACACTGAGGCCCGTGTCTGCACTGACCCTGAGAGTCTCCCTGTGGGCCCACTTTCTCTCAGCTGCCCCAGCAGCCTCCCCCTCTCAGGTGACGTACAGTCGGACACTCGCTGCTTCCTCTGAAGCCCCTGAGCTCTAGAACAAGAACCCTGATGGCTTCTCTTCATCCAAGTGAATCAAGAACACGCTACCCTACCTGTGACCGAACACAGAACCTGTGGGCTTCACTACTAtgccctcttaagcattatttggcagtgtgacacgcagctcctgtgcatagaagtgacactattcctacaatgcgcacatcatttgaaagcttattctcttggcctCCAGCGCGtctcattctcaaacacatccgattcacAGTGTCCGTGTCGCccaccatcattcagagcctgggggggAAACGCACAGTGTGCTCCGGGGTGGTCttattcagacggtcacagatcactcagttttgatcaggatttctttgcaaattggcttgttttgttcagaacaacctaacgattaatccagtata

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006071 glycerol metabolic process biological_process
GO:0008889 glycerophosphodiester phosphodiesterase activity molecular_function

KEGG:

id description
K22387 GDPD1_3, GDE4_7; lysophospholipase D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191632 lncRNA upstream 34913 1461724 ~ 1461939 (+) True G152198
TU191630 lncRNA upstream 38105 1458154 ~ 1458747 (+) True G152196
TU191523 lncRNA upstream 242893 1245031 ~ 1253959 (+) True G152111
TU191451 lncRNA upstream 439457 1057185 ~ 1057395 (+) True G152053
TU191435 lncRNA upstream 482472 1014078 ~ 1014380 (+) True G152040
TU191670 lncRNA downstream 2785 1509502 ~ 1515952 (+) False AMCG00005434
TU191834 lncRNA downstream 422738 1929455 ~ 1946800 (+) False AMCG00005429
TU191902 lncRNA downstream 748648 2255365 ~ 2323345 (+) True G152397
TU192219 lncRNA downstream 1565233 3071950 ~ 3090655 (+) True G152644
TU192220 lncRNA downstream 1565233 3071950 ~ 3090655 (+) False G152644
AMCG00005436 mRNA upstream 287 1491471 ~ 1496565 (+) True AMCG00005436
AMCG00005437 mRNA upstream 6230 1486213 ~ 1490622 (+) True AMCG00005437
AMCG00005423 mRNA upstream 16681 1469176 ~ 1480171 (+) True AMCG00005423
AMCG00005422 mRNA upstream 71516 1408433 ~ 1425336 (+) True AMCG00005422
AMCG00005425 mRNA upstream 90315 1403046 ~ 1406537 (+) True AMCG00005425
AMCG00005434 mRNA downstream 6486 1513203 ~ 1517580 (+) True AMCG00005434
AMCG00005432 mRNA downstream 51123 1557840 ~ 1567204 (+) True AMCG00005432
AMCG00005433 mRNA downstream 66921 1573638 ~ 1578641 (+) True AMCG00005433
AMCG00005444 mRNA downstream 73113 1579830 ~ 1584712 (+) True AMCG00005444
AMCG00005443 mRNA downstream 80694 1587411 ~ 1597651 (+) True AMCG00005443
TU191589 other upstream 117550 1376468 ~ 1379302 (+) True AMCG00005418
TU191585 other upstream 128896 1367014 ~ 1367956 (+) True G152159
TU191336 other upstream 959489 536751 ~ 537363 (+) True G151969
TU191334 other upstream 1096987 398925 ~ 399865 (+) True G151967
TU191729 other downstream 239243 1745960 ~ 1748934 (+) True G152267
TU191823 other downstream 293094 1799811 ~ 1803903 (+) True G152337
TU192049 other downstream 997193 2503910 ~ 2510676 (+) True AMCG00005481
TU192048 other downstream 997276 2503993 ~ 2510676 (+) False AMCG00005481
TU192155 other downstream 1338500 2845217 ~ 2849608 (+) True G152588

Expression Profile