RNA id: AMCG00005437


Basic Information

Item Value
RNA id AMCG00005437
length 2229
RNA type mRNA
GC content 0.56
exon number 10
gene id AMCG00005437
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1486213 ~ 1490622 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGTCTCTTCCTTCACAGCCTATCGGAGTCGTGAACGTCTTCTGCCCGCCAGAGGTAGTGTTAGCTGATTGGTTGGGCATCCCTGACTTTTAACTTTGAAAATAACCCGCCGCTGTTTCCTGCTCTCAGTGTCATGGCGAGGCAAATGgtcatGAGCAGCAGCGCTCAGCAGCAGCGCAAGAAGAGGAAGCTGAACCGGAGGCGATGGCTGCAGAAACGGCCCTGCCTGGAGGTGGCGCCACTCCCCGCTGCGCCTGCCGCCCCAGAGCCGCGGAGCACGCTGGAAGTCAGCCCGGTGGAGCCGCCCCCCATGGCATGTGCCAGCAATAGCAGGGTCGGGCGCTGGGGCCTGGGAGTGGTGCTGCTGACCGTGGGTGCCGTGTACCGGGGCTGGAGGAGCAGGCTGGCAGAGGTGTGCTCCCGGCTGCAGGACGCGCTCTTCCCGTGGCGAAGGTGCAGCCAGGAGCTGGGCGCCCTGCAGCAGCAGGTGGAGGAGCTGCAGAGGGAGCTGAGCCGGCTGCACGGCACACTGCAGctggGTGGGGAGGTGAAGAGCCTGTCCTCTTGTTCTGGGGCCGCAGTCTGCAGTCTTCCTGTTGGGCATCTGACGGCCCCGTTGCTCCTGGCCCCTCCCCCACCTGCTCCTGCTCTGCTGGCGCcgcctccacctccacctccacctccacctcctctgCCCCCTGCCGCCCTCCTGAAGAGACCCCTCCAGATCCTCAGGAAGACCCTGGCCTCCAAGACCCCTCGGAGCCCCCCAAGGAAGAGTGACATCCCTACTGCGGTGACCCTCCGCGACCTGCAGGCGGTGAAGCTGCGGAGAGTGACCAATCCCATCCGCAAGACCAGGGCGCCGTCCCCTGAGAAGACACGCGTCCCCCTGGTCACAGTGGATGAGCTGCAGAGGGTCAACTTGCGACCCCACCATGCCCTCGACCTGCCGCCCAAGCTGCGCATTGCCCTGGCCAGGTCGCCTGGCAAGAGCCCCCTGACTCTGCGCAGACAGCTGAAGAAGGTCAATATAGAGAGGAGCCCCGGAGGGACCCCGCTCTACgacaaggagaacaaggagacGGGCACTGGGCTCACCCCCATCATGACACAGGCACTGCGGCGCAAGTTTCAGATGGCTCACCCGAAAAGCCCGTCCCCCAAAGCCAGGGCCGTGAACCTGAGCTTCGATGAGCAGAACTGAAATGgctgcttttatatttaatggttttaatactCCCTCTGtgtgctatttttaaatatggaatGACCCGTGGCATGCTGGAGACCAGGGACTGTNNNNNNNNNNCCCCCCCCACTGCTGCTGAATCTACCAGAGGGACACGCATCGATGCACTTTTGTTTATTCTACACAGTCTGTGTCTGTCCTGTAAATAGATATCTCTGTGGAGGCCCGTGGGGAGTCCGGCTGCATTCTGGCCAACAGCTACCCGTTTTGGGAGATGGAGGCCCTGTTGTTGTTAAGACTCTCGCCTTCTGGTCTCCCCAAGAGCACAGCTGACGAGCGGCCAGGGGTGCCTCAGGGAACGGGGTGCGGACACCGTCTGTAGCCGATCTCGGGGTCTGTGCGCGAGTGCCTGGGCCTCCTGCTTTAGTCggtctgtgctgctgctgtacagtttaaaaaagaaaaacgaatgCAGAGATATTGTGAGGTCAGTATTGTTGATCAATATTATATAAGGCTGTGGAATAAGGACCATAAAAAAGCAAACCAGCACCACGGCCTCGGCACAAAACACTCACCTGTTGGCTAGCTTCACTGGCGGCACAACCTGGGCACCCGAACCACTCAACACTCCTCCAGACAGACGCGGTTAGCAGTGAATGATTTTGTGTAGCAACCGGtctatttaaaactaaaactaatcctGCATAAAAATCTCATTCACAGGCCCTGTGTTTGCTGGCAGTCTGAATAGGAAATACCTGCCAAGCTAAGCTCTGTATGCGAAGGTTCTCTAAAAGCTCGTACCTATAACCTGCTCCGTTTGCTCTTCACTCTAGCTGTGTAAAGTGTTTTGCATGGATTTTTGTATggatttttttcctgttgcaatacttttcagtgtgtttgtgctAAAGCTTACCAGTACGTAATGTATATAAAGTTTACATGGCTGTCTTTGTCATCTCAACTGTAAGAAGAGCTCATTGTGTAAAGATCACACTCTGTAAACACTTACATTAAACAACATAACCAGA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03030 DNA replication
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191632 lncRNA upstream 24274 1461724 ~ 1461939 (+) True G152198
TU191630 lncRNA upstream 27466 1458154 ~ 1458747 (+) True G152196
TU191523 lncRNA upstream 232254 1245031 ~ 1253959 (+) True G152111
TU191451 lncRNA upstream 428818 1057185 ~ 1057395 (+) True G152053
TU191435 lncRNA upstream 471833 1014078 ~ 1014380 (+) True G152040
TU191670 lncRNA downstream 18880 1509502 ~ 1515952 (+) False AMCG00005434
TU191834 lncRNA downstream 438833 1929455 ~ 1946800 (+) False AMCG00005429
TU191902 lncRNA downstream 764743 2255365 ~ 2323345 (+) True G152397
TU192219 lncRNA downstream 1581328 3071950 ~ 3090655 (+) True G152644
TU192220 lncRNA downstream 1581328 3071950 ~ 3090655 (+) False G152644
AMCG00005423 mRNA upstream 6042 1469176 ~ 1480171 (+) True AMCG00005423
AMCG00005422 mRNA upstream 60877 1408433 ~ 1425336 (+) True AMCG00005422
AMCG00005425 mRNA upstream 79676 1403046 ~ 1406537 (+) True AMCG00005425
AMCG00005424 mRNA upstream 83512 1388688 ~ 1402701 (+) True AMCG00005424
AMCG00005413 mRNA upstream 101623 1381741 ~ 1384590 (+) True AMCG00005413
AMCG00005436 mRNA downstream 849 1491471 ~ 1496565 (+) True AMCG00005436
AMCG00005435 mRNA downstream 6230 1496852 ~ 1506717 (+) True AMCG00005435
AMCG00005434 mRNA downstream 22581 1513203 ~ 1517580 (+) True AMCG00005434
AMCG00005432 mRNA downstream 67218 1557840 ~ 1567204 (+) True AMCG00005432
AMCG00005433 mRNA downstream 83016 1573638 ~ 1578641 (+) True AMCG00005433
TU191589 other upstream 106911 1376468 ~ 1379302 (+) True AMCG00005418
TU191585 other upstream 118257 1367014 ~ 1367956 (+) True G152159
TU191336 other upstream 948850 536751 ~ 537363 (+) True G151969
TU191334 other upstream 1086348 398925 ~ 399865 (+) True G151967
TU191729 other downstream 255338 1745960 ~ 1748934 (+) True G152267
TU191823 other downstream 309189 1799811 ~ 1803903 (+) True G152337
TU192049 other downstream 1013288 2503910 ~ 2510676 (+) True AMCG00005481
TU192048 other downstream 1013371 2503993 ~ 2510676 (+) False AMCG00005481
TU192155 other downstream 1354595 2845217 ~ 2849608 (+) True G152588

Expression Profile