RNA id: AMCG00005439


Basic Information

Item Value
RNA id AMCG00005439
length 3198
RNA type mRNA
GC content 0.64
exon number 28
gene id AMCG00005439
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1523660 ~ 1536868 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGCAGTGAGCATCAACAAGGCCATCAATACACAGGAGGTCGCTGTCAAGGAGAAGCATGCGAGAACCTGCATCCTGGGCACGCACCATGAGAAGGGCGCGCACACCTTCTGGGCGGCTGTGCACCGGCTGCCCCTGTCCAGCAACGCAGTGCTCTGCTGGAAGTTCTGCCATGTCTTCCACAAGCTGCTGCGAGACGGGCACCCCAACGTGCTGAAGGACTCCATGAGGAACAAGCCTGACCTGGGAGACATGAGCAGGATGTGGggACACCTGAGCGAGGGCTACGGCAGACTGTGCAGCATCTACCTCAAACTCCTCATTACAAAAATGGACTTCCATGTCAAGAACCCCCATTTTCCCGGCAACCTGCAGATGACGGACAGGCAGCTGGACGAGGCCGGCGAGAACGACGTCAACAACTTCTTCCAGATGACCGTGGAAATGTTCGACTACATGGAGTGCGAGCTCAACCTCTTCCTGGCCGTGTTCAGCTCCTTGGACATGTCCCGCTCGATGTCTGTGACGGCGACTGGGCAGTGCCGCCTGGCCCCCCTGATCCAGGTGATCCTGGACTGCAGCCACCTGTACGACTACACCGTCAAGCTGCTCTTCAAGCTTCACTCCTgcCTCCCTGCCGACACCCTGCAGGGCCACAGAGACCGTTTCCAGGAGCAGTTCAAGAACCCCGTGGTGGTCATCCCCCTGGAGGCTTCGTCCCCCGACAGCGAGCCACTGGTGGAGACGGAGGACCTGGTGGACACGGACACCCCGCCCCAGCCGAGCTCCCTGGAGAACAAGTTCGATGACCTCTTCGGCACGTCCTCCGCCACCGACCCCTTCAACTTCAACAGTCAGAACGGCACCTACAAGGATGACAAGGACCGCCTGATCGAGCAGCTGTCCCGGGAGATCCGCGCGCTGAAGGAGGAGCTGGAGACGTTCAGGCTGGAGagCGGCCGGTTGGTGCAGGCCCTGCGCAGCCAGGTGAGCGAGCTGGAGGCGGAGCTGGCAGAGCAGGCCCACCTGAAGCAGCAGGCGCTGGGCGAGGGAGAGTTCCTGCGCGCCGAGCTGGAGGACCTGCGGCGCGTCAAGGAGGACACGGAGAAAGAGCAGCGCTGCCTGACCGAgatagagaGGAAGGCCCAGGCCAACGAGCAGAGGTACACCAAGCTGAAGGAGAAATACACCGAGCTGGTGCAGAGCCACGCGGACCTGCTGAGGAAGAACGCCGAGGTGATGAAGCAGATGACGGTGGCGCGGGCGGCGCAGGGCGAGGTGGAGAGCGTGCGACACGAGATGCAGGAGAAGGTGAAGCTGGCGAAAGAGGAAGCGGAGCTCCGGGTACGAGGGACGGggaggtggagggagggagggagggaggaagggggagGGATGTGGTGTCAGTGCGTTCTGTGCCTGCGCGGTTCTCTGAGTGTGTTGTCTGCGTCTctgcaggagcaggagcaggtgGAGCAGCTGCAGGTGCTGCAGAGGGATCTGTGTTCCAGCAGAGAGGAGCTGGAGACGCTGAGAGCCACTGTGGTCTCCTCACAGCAGGCGAGCGAGGAGCTCAGCGGGCGCCTGGAGGCCCTGCAGGGGGAGAAGGAGTCTCTGAGTGACAGGCTGGTGCAGAAGGAGGCGGAGCTGTCCGGACTGGGGGCGGAGCTTCAGCGCGTGCAGCAGAGCCTGGCCAGTGAGAGGGAGAGCGGCgagAGCCGGGAGCAGGCCCTGGAGAGCCAGCTGGCGAGTGCGCGCTGGGCTGCCCTGCAGGGGGCGCTGGAAGAGGCGCAGCGCATTGTGCAGGACTCGCTGTCCCGGCTGGATGACCCCGCGCACATCAGCTGCACCAGCTCCGCCGATTACCTGGTGTCTCGGAGCCAGGCCGCGCTGGAGTGTGTTGACCGGCTGCAGGCCGCCCAGGACCGCTACCTGACCGACCGCACAGatgTGTCGGAATTGCTACGCTCTGTGGCCCACTTTGGCCACCTGGTTGGCGATACGATAGTGCAGGGCAGCGCCACCTCGCACATGGTGCCCCTGGAGCAGGCAGACTCGCTGTCGGAGGCGGTGCGGGTGTGTGGCACCGAGGCCCTGGGCTTCCTGAGCCGGCTGAAGGAGGAGGAGTCGCTGGGCAGTGTGGACAGCGCCCGACTGAGGGACCACCTGGCCAGCATCCAGGCCATCGCCGAGaagtTGCGCCCGCGTGGGCTGGAGCTGCAGCAAGGGGAGCTGGGGGACCTGGTGGAGCAGGAGATGTCCGCCACCTCCATTGCCGTGGAAGCAGCTGCTGCCAGGATCGAGGAAATGCTGAGCAAGTCCAGGGCTGCTGACTCCGGGGTCAAGATGGAGGTCAATGAGAGGATCCTGGCCTCCTGCACGGAGCTGATGCAGGCCATCAAAGTGCTGGTGCTCTCCTCCAAAGACCTGCAGAGGGACATCGTGGAGAGCGGGAGGggGGCGGCCTCCACAAAGGAGTTCTACGCCAAGAACTCGCGCTGGACCGAGGGGCTCATCTCGGCATCCAAGGCGCGCCGGGCTCAGCTCCATTACTGTGTTTTACTGGTTTATGTCCATGTCCACTGGGACACggACGCTGCGGACCTGGTGGTGCAGGGCAAGGGCAAGTTCGAGGAGCTGATGGTGTGTTCCCACGAGATCGCAGCCAGCACTGCGCAGCTGGTGGCCGCCTCCAAGGTGAAGGCTGACAAGGACAGCGGGAACCTGGCCAAGCTGCAGCAGGCGTCCCGGGGGGTCACCCAGGCCACCGCCAGCCTCGTGGCATCCACCAAGTCCGGCAAGTCCCAGATCGAGGAGAAAGACACCATGGACTTCTCCAGCATGACGCTGACGCAGATCAAGAGGCAGGAGATGGACTCGCAGGTGCGTGTGCTGGAGCTGGAGACCTGGCTGCAGAAGGAGCGCGAGCGTCTGGGCGAGCTGAGGAAGAAGCACTACGAGCTGGCGGGCGTGGCGGAGGGCTGGGGCGAGGAGGACGgtccCCAGACCCACACTGTGGGCTCGGAGACACCGggttcctctctctgtgtctgttgtaACCGCAGTGGAGCCGGAGACTCGAGGACTGGAGACGAGGCGGGGGAGACAGCTGTGCCCTGCATTGCCCTGCCCCCCCCAGGCGTCGCTGACACACCCAGGCAGATCCTTGCAGCTCTGCGTCTCCCCAGGGCCGTGTGA

Function

GO:

id name namespace
GO:0001878 response to yeast biological_process
GO:0009790 embryo development biological_process
GO:0005543 phospholipid binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K04559 HIP1; huntingtin interacting protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191631 lncRNA downstream 64998 1458237 ~ 1458662 (-) True G152197
TU191612 lncRNA downstream 125268 1397341 ~ 1398392 (-) True G152178
TU191552 lncRNA downstream 188220 1257297 ~ 1335440 (-) False G152133
TU191548 lncRNA downstream 264734 1219327 ~ 1258926 (-) False G152133
TU191737 lncRNA upstream 30250 1567118 ~ 1615497 (-) True G152271
TU191799 lncRNA upstream 155881 1692749 ~ 1693555 (-) True G152320
TU191821 lncRNA upstream 209085 1745953 ~ 1752738 (-) True G152335
TU191837 lncRNA upstream 404155 1941023 ~ 1946800 (-) True G152344
TU191933 lncRNA upstream 630736 2167604 ~ 2175954 (-) True G152424
AMCG00005440 mRNA downstream 375 1517483 ~ 1523285 (-) True AMCG00005440
AMCG00005426 mRNA downstream 37832 1480176 ~ 1485828 (-) True AMCG00005426
AMCG00005428 mRNA downstream 55785 1462232 ~ 1467875 (-) True AMCG00005428
AMCG00005427 mRNA downstream 87352 1431904 ~ 1436308 (-) True AMCG00005427
AMCG00005419 mRNA downstream 147187 1371342 ~ 1376473 (-) True AMCG00005419
AMCG00005438 mRNA upstream 33885 1570753 ~ 1574756 (-) True AMCG00005438
AMCG00005445 mRNA upstream 98877 1635745 ~ 1637496 (-) True AMCG00005445
AMCG00005446 mRNA upstream 123159 1660027 ~ 1666365 (-) True AMCG00005446
AMCG00005447 mRNA upstream 138376 1675244 ~ 1685460 (-) True AMCG00005447
AMCG00005460 mRNA upstream 160409 1697277 ~ 1707786 (-) True AMCG00005460
TU191743 other downstream 16032 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 151923 1371383 ~ 1371737 (-) False AMCG00005419
TU191554 other downstream 264734 1219327 ~ 1258926 (-) False G152133
TU191268 other downstream 1459932 62621 ~ 63728 (-) False AMCG00005407
TU191734 other upstream 75905 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 171815 1708683 ~ 1721202 (-) True AMCG00005461
TU191946 other upstream 660486 2197354 ~ 2329684 (-) False AMCG00005532
TU192197 other upstream 1338418 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 1534992 3071860 ~ 3090714 (-) False G152645

Expression Profile