RNA id: AMCG00005446


Basic Information

Item Value
RNA id AMCG00005446
length 2201
RNA type mRNA
GC content 0.56
exon number 8
gene id AMCG00005446
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1660027 ~ 1666365 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTGTATGAGTTTGGATGCTTTATAAAATCAGTGCTCCAATACAAACATAGTCCATTACACCTCTGAGTACACTTTGAGTACCGCAGTACAGACGCTACTCGGACTCGGCTGAACTCTCGGGAAGTCTCGTCTGGGTCGCCGCGATTGGGCCGCTCCCCCGCCGCGGCACGGAGGCTCATTGGGCGGGACGGCGGCGCTGAGGGCGGATCGGTACCGAGCCGAGCCACTTCCAATAACACgacaaacacgcacacatatcGGCCATTGttcatattaaaagcaaaaacacacgACCGAGTGAGCGCCCTCTCCGCAGTGGCACCATGTCGACCAACGGCCTGTCGCGACACGTCCAGCAGTTCCTGAACCCGGAGCCAGAGCGCCCGAGGCCGGCCGCAGCGCAGAGTCCGTACCAGCGCCTGGCCCGGCAGATGCAGGACCTGGTGGGAGACGGGGGCATCCTGAAGGAGGTGATCCAGCCGGGCATGGGCCAGCCGGTGCCGGAAAATGCCTCGGTCGTATATCATTTCTCTGCCTATCTGGAGTACTCGGACAGACCATTTGAATCCAACCGCTACCAGAAGTATCCGGGGCTGATGAAGCTGGGGAGAGATGTGACGCTGTGGGGCCTGGAGGTAGGCCTGCTGACCATGAGGAGGGGCGAGTTCTCCCGCTTCCTCTTCCTGCCCAGGTACGCCTACGGGCCCATGGGCTGCCCCCCGCTCATCCCGCCTGGCGCCACCGTGCTGTTCGAGGTGCAGCTCATCGACTTCCTGGACTCCGCCGAGGTGGACGATTTCTTCGCCCTCAGTCTGGAGCAGCAGAGTGGCGTCCCGTTGCCCACCGTGCTGAGCGTGGTCAACACACAGAGGAGCTTCGGCAACCGGCTGTTCCGACAGAGCCGCTACGAGGACGCCAAGGACCGCTACAAGCAGGCCATCGCCGTCCTCTCGAACCGTGAGCCGGCGGACGAGGAGGAGAAGAGCCAGATCTCGGCCCTCAAGCTGCCTGTCTTCCTCAACCTGTCGCTCACCATGATGCGCCTGCAGCGGCCGGCCAGGGCGCTGGTCTATGGCAGGCGGGCGCTGGACATCAGCCCGCATCACGCCAAGGCGCTGTTCCGCTGCGGACAGGCGAGTCTGCGTCGGCCGGGGATCGCCCCCTCGCCCTCTtgctccccctctcctctctcttctctcgcGCTCTCTTTTGCCCCCTCTCATCTGAATGagattaaactgtaaaataataaacaaaaaggaaacacCAGCCCATCGTAAAAGGCATCCCCAAACCTTCACCCTGCTCTCGTGCTCCGTGTCCCAGGCACACCTGGAGATGGGCGACTACGAGGAGGCGCGGGACTTCCTGGTCCAGGCGCAGGTGGAGAGACCCTTCGACACCGACATCAACGACCTGCTGAAGAAGCTGGCGagCTGCTACAAAGACTACACCGAGAAGGAGAAGCAGATGTGCGTCAAGATGTTCTCCAGCCTGCGCGCCGTGTCTGAGAAATAGAGGAGTCGGGGGCCGAGTGCACGGGGGGCCACGGAGCAGCGAGACTCTACAGGAGGAATCGTCCCCTCGGCTTCAATCAACGCAATACTTCTGTGATAAACTTATGTTTTGGAAAacactgaatatttaaaaagaattgtattatgtttctgtgtgtgtgcaaatctatatataatcaaatagTTATTGACGAAAAAGTAAGAAGGTTGTGAAGGGTCTAATTAAAGAGAATCTATGCTGTTGTGGGTGGGGCGGAGTTCTAATGTGAATCTCATCTATTTTCATATGAGAAACGACAAAAACAACTCTAATAATGACAGCCAAGTAGCTTTCGATAATCTCTCTCTGTACTGCTGATGACTGGatgtgtgtggtgggggtggaGAAACCAAGATAAagacgggagagagagaggagagcgaatagtggggtgggggggcgtttactttatttttatgacaAGATCGCCATTCCTAAGTTGAGCTTTATCCTCATTTGGCATCCAGTGTGTTTGACTTCCTAAATGATGTTGTATGGTTTCCTAATGTGTGTGGAGGTGTTGTGTAGTGTTGGTGTACTTCACACCTGTCCACAAAGCCTCTGTGATTCCTGGGGAGTCTGGTTCTGGTTCCGTATTGTGCTCGCAGGTCCGGATgcacaataaacacattcaatCGACTA

Function

GO: NA

KEGG:

id description
K09572 FKBP6; FK506-binding protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191737 lncRNA downstream 44530 1567118 ~ 1615497 (-) True G152271
TU191735 lncRNA downstream 89849 1521742 ~ 1570178 (-) False G152271
TU191631 lncRNA downstream 201365 1458237 ~ 1458662 (-) True G152197
TU191612 lncRNA downstream 261635 1397341 ~ 1398392 (-) True G152178
TU191552 lncRNA downstream 324587 1257297 ~ 1335440 (-) False G152133
TU191799 lncRNA upstream 26384 1692749 ~ 1693555 (-) True G152320
TU191821 lncRNA upstream 79588 1745953 ~ 1752738 (-) True G152335
TU191837 lncRNA upstream 274658 1941023 ~ 1946800 (-) True G152344
TU191933 lncRNA upstream 501239 2167604 ~ 2175954 (-) True G152424
TU191973 lncRNA upstream 628468 2294833 ~ 2300752 (-) False G152452
AMCG00005445 mRNA downstream 22531 1635745 ~ 1637496 (-) True AMCG00005445
AMCG00005438 mRNA downstream 85271 1570753 ~ 1574756 (-) True AMCG00005438
AMCG00005439 mRNA downstream 123159 1523660 ~ 1536868 (-) True AMCG00005439
AMCG00005440 mRNA downstream 136742 1517483 ~ 1523285 (-) True AMCG00005440
AMCG00005426 mRNA downstream 174199 1480176 ~ 1485828 (-) True AMCG00005426
AMCG00005447 mRNA upstream 8879 1675244 ~ 1685460 (-) True AMCG00005447
AMCG00005460 mRNA upstream 30912 1697277 ~ 1707786 (-) True AMCG00005460
AMCG00005461 mRNA upstream 42322 1708687 ~ 1723500 (-) False AMCG00005461
AMCG00005462 mRNA upstream 88548 1754913 ~ 1774451 (-) True AMCG00005462
AMCG00005420 mRNA upstream 136552 1802917 ~ 1808080 (-) True AMCG00005420
TU191734 other downstream 44530 1612773 ~ 1615497 (-) False G152271
TU191743 other downstream 152399 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 288290 1371383 ~ 1371737 (-) False AMCG00005419
TU191554 other downstream 401101 1219327 ~ 1258926 (-) False G152133
TU191269 other downstream 1596299 62621 ~ 63728 (-) False AMCG00005407
TU191793 other upstream 42318 1708683 ~ 1721202 (-) True AMCG00005461
TU191946 other upstream 530989 2197354 ~ 2329684 (-) False AMCG00005532
TU192197 other upstream 1208921 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 1405495 3071860 ~ 3090714 (-) False G152645
TU192573 other upstream 2622300 4288665 ~ 4289892 (-) False AMCG00005539

Expression Profile