RNA id: AMCG00005450


Basic Information

Item Value
RNA id AMCG00005450
length 1353
RNA type mRNA
GC content 0.46
exon number 4
gene id AMCG00005450
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 958000 ~ 962580 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAGAAGGGAGGGGCGGCCAGACATTTCAGGAGAGAACCTCGTGGGTCCTGGCAGTCTGTGCATTCGTCCGTCAGGAGGATTATCTCGGAGGTCAGCCATGGCTCTGGCAGGTCTGGCGGTGACCCTGTTCTTCGGTGTGCCTTTCTGCACAGCAGCAGGACAGATCACTGCAGTGAACTATGTGCCCGAGATCACGCCCTACAAAATGGCAGGACGGGTCACCAGCAGTACAGTAACTGTGAAGCAGCCGACGTGCTACTTTGAAAACCTGTCCAACATGCCCTGCACCCCGGACCAGTGTCAGGTGTGGCTGGTCGCTGCCGTGGGCTCCGGAACCAATAACTTTGATGCAGACAAGCTGCAATCAAGTTTCAACATCCTCAGTGCATCTCCTTATCCAACTGCTTTCACTGGCAACCCTCCGAAGAACTACTTTCTCACTGAAGTGGGAGTCCAGAAGGCCTTCCCCTGCCAGCAGCCCTTCGGGATCCTGTACTTCAGGGTCGGCGACCAAGGGAACTGTAGCACCCCCAACTGCAACGGCATCCTTCCAGCCGGCTCCACAGTCAGCAGGGGCAAGTTGTGCCAGCAGTACAAGAGCACCCCCTACCCCACTCTGGGCTCCTTACGGCTGAAGAAGTACGACACTCACCAGCTGAAGAACCCTGTTGCCTACAATCAACAGACTTTCCAAAATGAGGTCAAGAAGTACAGTGATCCCGAGGTGCCAACCAAGTACTCGTATTCCAACGTCTCTCCACAGTCTCTGGGCTCCCTTAATGCCCAGAGATATGAACACAACAATCTGAAAGATGACGGCCGCTACGCAAACCCCCTGTGACCACAACAGGCATGTCTGTAAGAACGGGGCCTTTGATTTAACAATCATTTATAGGATGATTGGGATTAATGTCCAGCGTTCTGATGAATCGGGAGATTATCTGAGCTGTAGTGTTTCCTTAAACTGCACATTAAACCTCAGACACGTTCAGTTGTTATTCTTCCTTGACATGTTTTAATTCCAATcatgtgaatatatatacatttgtgtaaaatatgcaaTGCATTATATAAGAGACAAACTGAAAAGGAACCTAAGAAAGttacaataaatgtttaaatgaaggCGAAATGTAATGACAAACAAGTGAGAGTGAAAAACTATAAAAGTAAAATCAAGTATaaattcaaaattgaaaaaatgaaatgtcttcaTCTTAAGAGTGGAGTGAAAAATGTCTGCaaatcagaaatggacaaaTACTGACcatatgcaaataaaactgtaatagaATGACTTTGAATAAATTTTGGCTTAAAGCAATGTTATTTTCCAATGTAACACAAAAGGC

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191346 lncRNA upstream 267064 690659 ~ 690936 (+) True G151978
TU191335 lncRNA upstream 421308 535895 ~ 536692 (+) True G151968
TU191331 lncRNA upstream 597708 360093 ~ 360292 (+) True G151964
TU191330 lncRNA upstream 602140 355581 ~ 355860 (+) True G151963
TU191294 lncRNA upstream 709881 175252 ~ 248119 (+) True G151941
TU191435 lncRNA downstream 51498 1014078 ~ 1014380 (+) True G152040
TU191451 lncRNA downstream 94605 1057185 ~ 1057395 (+) True G152053
TU191523 lncRNA downstream 282451 1245031 ~ 1253959 (+) True G152111
TU191630 lncRNA downstream 495574 1458154 ~ 1458747 (+) True G152196
TU191632 lncRNA downstream 499144 1461724 ~ 1461939 (+) True G152198
AMCG00005453 mRNA upstream 1579 953230 ~ 956421 (+) True AMCG00005453
AMCG00005449 mRNA upstream 10768 935734 ~ 947232 (+) True AMCG00005449
AMCG00005452 mRNA upstream 24580 926198 ~ 933420 (+) True AMCG00005452
AMCG00005451 mRNA upstream 32147 906828 ~ 925853 (+) True AMCG00005451
AMCG00005448 mRNA upstream 53380 878967 ~ 904620 (+) True AMCG00005448
AMCG00005468 mRNA downstream 11050 973630 ~ 984375 (+) True AMCG00005468
AMCG00005472 mRNA downstream 22110 984690 ~ 984959 (+) True AMCG00005472
AMCG00005471 mRNA downstream 24051 986631 ~ 986935 (+) True AMCG00005471
AMCG00005470 mRNA downstream 24768 987348 ~ 987707 (+) True AMCG00005470
AMCG00005469 mRNA downstream 26047 988627 ~ 998834 (+) True AMCG00005469
TU191336 other upstream 420637 536751 ~ 537363 (+) True G151969
TU191334 other upstream 558135 398925 ~ 399865 (+) True G151967
TU191585 other downstream 404434 1367014 ~ 1367956 (+) True G152159
TU191589 other downstream 413888 1376468 ~ 1379302 (+) True AMCG00005418
TU191729 other downstream 783380 1745960 ~ 1748934 (+) True G152267
TU191823 other downstream 837231 1799811 ~ 1803903 (+) True G152337
TU192049 other downstream 1541330 2503910 ~ 2510676 (+) True AMCG00005481

Expression Profile