RNA id: TU191793


Basic Information

Item Value
RNA id TU191793
length 4837
RNA type TUCP
GC content 0.51
exon number 7
gene id AMCG00005461
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1708683 ~ 1723500 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCTCACTCCCCTGCCTGCTTTCTCCAGCACGGACTGCAATGGCGGATTACGATAACTACGATGACCGGGATCGGGCTTACGGTAGCTTCGGCGGTGGAAGAGGATCCCGAGGTCCTGGTGGCCCCGGTGGGCCCCGCAAACAGAAGGAGCTCCCAACGGATCCGCCCTACACGGCCTATGTGGGCAACCTGCCCTTCAACACCGTGCAGGGGGACATAGATGCCATCTTCAAGGAACTCAGCGTCCGCAGCGTCCGACTAGTCAGAGACAAGGAAACCGACAAGTTCAAAGgtttttgttacGTAGAATTCGATGATTTGGAATCCCTGAAGGAAGCCTTGACATACGACGGTGCTCTCCTGGGTGACCGCGCACTGCGAGTGGACATTGCGGAGGGCCGCCGGCAAGAGAAGGGAGGTGGAGGCGGCGGTGGCAGCGGCTTCGGCTTCAGAAAaccagaggagagaggaggaggtaCCCTTGAGCCGTCGTCCCTATTTCTGTAGCGGGGGGGTCCACTCCCTCGGGACAGTGCTGGGGGGCAAGCAGCGCCTTTTACTCCCCGTCACTGTCCCCGAGTATTACATCATCACTTCGTGTGCACTATCGATACATCTTCCTTCAATACgttatagttgttttttttgttgttgttgttgttgttgtttatgatGCAGACATTGAGAActaatgtgacttttttttctcagatgGCAGTTGGGCAGTTAgggattgtttttggtttctgtgcaacacatttgtaaagaggaaaatattttaaaactcgAACAAAAAATGGATTGTGCTGCCGTCACTGTTATCCTGTGATTTCATTACTGCAGGCTCACAAATACACTAATCTAACCATTCTTttagtgtgtgagagagattgagagagtgtttgtttcttaaacCTCATCCAGCACAGGTtaggtggtgtttttttctcttcacctTTTCCATTTCACTCCTCATTCCTCATCCacgtccccccccacccccagctctTACACACTCTCCTCTCGCACACGCGTACTCCCGTCCAGGAGAGCGTAGACCTTGCCACGGGCTGTGTGGAGGTCTGAGCGGTGCGGCCCCTCGTAGCCAGAGCCTGCGGGTCTCTACCACCAGCCTCTGTCCATCTCCGGACCTGAGCTTCTTTTACAGACTGTCCTGCTCTTCTTGCTCTCCTGCTCCAGCTGTGGactgaatgactgcctgactaCTAACCCACAGAGTAGCGTCCGGCAGAGAGCGCTGTGTGTGCTGGCAGCCTCTCCTGCAGGCTGATGTGTGTCTTTAACCAGGGCCCCCCCCATGTCCCTTACAGGCCGAGGAGGCTCCAGAGGGTCCCGAGGGGGCGGGAGAGACCCCAGAGACTCCAGAGATGACTTCGAGCAATATGGAGGTGGCGCAGGAGGCGCCGGAGGTGCTGGAGGCTTTAGAGATGATGACTTCCTGGGTGGGAGGAGTCGAGGGGGTGGTCGCCCTGGTGACCGGCGGGGGGGTACCACTGGAGGCTTGGGTCGCTACCGAGAAGGACCTCCCCGCGGAGTCTCCATGGACTTCCGGGAGCCCTCTGAAGaGGAGAGAGCCCAGAGGCCTAGACTACAGCTGAAGCCGCGCACTGTCGACGCGCCCCTCAACCAAGTTGCCAACCCCAACTCGGCTATATTCGGCGGGGCCAAGCCCAGGGAGGAGaattaataAATCCGTGCGGCTGCATTATTCCGGAAGGCTAGACTGGATCCCACCGGCTTTGTCCACCAAAAATCTTTCAAAGACTTCTCCCAAAGAAAAGCCCGCAAGATTCTAAGATGCTGGGCTCGTACCCCTCTCTCCGGTTACACAATCGATGCCCTCGCCtgactggtttaaaaataaaaaataccggCGGAGTCTTGGGCAGCGGTGCCGACACAGCTTTGTGCCAGCGCTCGATTGTGTAGCGACGCCAAAACCGGGCGACTACAACGGTGGCTGCAGCTCCATTCTGTTGCCTTTGGGTAAGGACTTCCTGGTATTTAACCCCTTCTCTTCCCCTCCTTCTCCAAAGGcatctttttttctgttgttcagAAACGGTGAAATGGACACGCACAGCGTAGACGCGGCCCGTCCGTCTCGTCTGCTTTGTGCgctgctgtttttttggttgtttttgtaacaccccaccccccccaacccacccaccctcttatttttgttctcccttttttattattttcctggaCGGCGCATCCAAAACGCCGCCACATGTAGGTATCCAGTGTTGACTAGTGTGCCAAGAGCCACAGAACCGTTACCGAGGTTTTTGTCcggttgtgtttttgttttaatataaagtcTTAATGTGTAATTGTTGCGTCCTGCAGTTTCCATTCAGTTTTGAAAGATTTTTGACCTTAAGTCGGTGCCATCCAGAGCAGGGTAGCTTTCCGTGGTGATGAGGCGGCGCCGGACGACCCCCGACGCAAGTAGGAGAGCATTGTGCGACGCGCCCTAGATTTAAACTGGCCGGGTGGAATTGCTACTGTCCTAGTCGCTCTGACGTGTATTTATCTTTCAACTTCCACAGCTAGCGATAGTGacataaacaaactaaaataataaatatatatgtataaaaaaaattgatcaCTCAAACTCACTGTACTGCCTGCATAGAAGAAAAAAGGCTCATCGCAGACGTAAGAGGAGGAGTTTCTCCAAACCTCTCGTCTCCAGTCTAGACGgcactaaatgtaaaaaaaaaaaaaaaaaaaaaaaaaaagctgtcttTAGTCCATCTGGGTCGAATGCGTCTCGCATGGGACTTTGTGTGCTGCGCCCGTTTTATCCCGACTTTTCTTTAACCAGCTGGGTGTGACATGAAGTGTAGCCATAGCTTTTCTTACAGTATCTATAAAAGACcagtctgtctttgtttttttttattgtttttccccttcctccccctccccgattttgtttttctcacacacacccccGCCCCCGCTCCCGCTGTCCCCCATCTCCTCTTCACTGTTAATggcaataaaacatatatttgtctTACAGATGCTCTTCAGAATGTGttgaagtattaaaaaaaaaaaatctagaccAGTGATTGAATGTCCCTTAGCTAGGCTTGGCTGGGCTAATGCTGTCGACTGTGGAAGCAGAGTGGCGGGGGTGGGGTACACCCTCTATGAGCCAGACACGTTGTCTACAGCATTAGCCGATAGCAAACCATCCCTGTGCCACGTGGAATTGTGAGGCCAGGAAACGACGGGATGGGGTAGTGGGACAATCCCTCCGAATCTACGGGGCGGTTTTGATTTACATGAGCATGTGTGCccccttttttttgtgtgtttgtttagatTACTCTCCccatttgtttgatttacaaTTTGATCACTAGCAACTGGGAATAAGTGTACATAGCTGTTCAACTTCTTGTGGGTGTGGGGGTCCCGATTGTGCTGCCTCAGCCTCCCacaagggggtggggtggggagggtgggTGAGCGAGCAAGTGATGTAACCACCACGGCACAGTGCGATGGTGGCTCACGGCGGGGTTTCGGCTTTGCTCTGGGGAGGCgggggggagaaaagaaaacgTCTCTCCAGGTTCTTGAAGTGCTCTTTAGATTCAAGATGACCAGATGTCATGTGTGGAGTGAATTCTAGATTCTAGAAGTCTtgcagattcttttttttttttttggttagatGTGCATCATTTGAATCTTTGCTTTTCAAAGAGAAATTAGTTTTCTCAGAGCAGCGTGTCAGCGCACAAGGCTGCTTGGGTTCAGAATAATCTCACAAAGATTAAAAGGGGGCGGGAGTGTAAACCCTTGAGTAGAAGCTGTGAAAACCCTCGTTCAAATTTAGTAAAAtagtaaaaatgaataaacttgAGTAGCACAATGCCCCACGCTGAAAGGGATGGCCCCGGaggcctgtgtttgttttattttttactgtgcAAGTGATCTGGGGACTTTAAAGGGGCCCAACCTGAATCAGCTgagtttaaattgaaatgttcaGCCTGGAGAGAGCCTCCATTTTCACCCCGCCCAGCTCTCTGAACCCCGTCGAGCTGCAGCCCGTGGAGGCTGGTGGTGATCAATGAAGTTGTCTCGCACTTTCTCCGTTGCTCATGCTGTTGAGTAATTGCCCCAGCATGGGCATAGAATGGGGCAGATCCCCCGCACCCCCCGTGACAGTCCACACTAAACTCCCCAAGGCATCCCCAACGAGACGGGCGGGAGCACCGCGGTGTCTGGAGAGAGGCTTTCAGAGGGCTAGAGGGGCTGAAGGCAACAGGCTTCTCGGGGGGGGCCTCCTGTGGCCCCCTTGGGAAGCTGACTGGGTTCCCCTTGATTGTGGTAACTATATCTGCTGTGAACCCACGAACCTCCCCACAGTGCCCCGGGGCAACAGGCTGCACACCTTGGCCTCCATCGACCCGCATCTCACCATTAACCGCCGTCTGTCCGACACACTGCAAGCTGGCCAGACCTGCATCCTTGTGTTTGTCCTCGAAGTGCGTCGCTCTGATGTGATCCTGACGGCAGGGCCTGAATGTGTTCGGGGGGTGGGAGGGGATAGATGCAaattatacttttcttttttttcttttaattaaaccatcccatgttaatgattgtttcactctttgacttttaaatgtaacaagGCAAACTCCCGACACTTCACACATTCTGCTTCGtaaggaaaaacaagaaaaacgttaaaaaaagaaaaaaagtgaaattaaaaggaTTGGTATTTTGTGAATgatcttttaaataaaagaaaaccttaAATAACCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191799 lncRNA downstream 15128 1692749 ~ 1693555 (-) True G152320
TU191737 lncRNA downstream 93186 1567118 ~ 1615497 (-) True G152271
TU191735 lncRNA downstream 138505 1521742 ~ 1570178 (-) False G152271
TU191631 lncRNA downstream 250021 1458237 ~ 1458662 (-) True G152197
TU191612 lncRNA downstream 310291 1397341 ~ 1398392 (-) True G152178
TU191821 lncRNA upstream 24751 1745953 ~ 1752738 (-) True G152335
TU191837 lncRNA upstream 219821 1941023 ~ 1946800 (-) True G152344
TU191933 lncRNA upstream 446402 2167604 ~ 2175954 (-) True G152424
TU191973 lncRNA upstream 573631 2294833 ~ 2300752 (-) False G152452
TU191974 lncRNA upstream 573631 2294833 ~ 2318672 (-) True G152452
AMCG00005460 mRNA downstream 897 1697277 ~ 1707786 (-) True AMCG00005460
AMCG00005447 mRNA downstream 23223 1675244 ~ 1685460 (-) True AMCG00005447
AMCG00005446 mRNA downstream 42318 1660027 ~ 1666365 (-) True AMCG00005446
AMCG00005445 mRNA downstream 71187 1635745 ~ 1637496 (-) True AMCG00005445
AMCG00005438 mRNA downstream 133927 1570753 ~ 1574756 (-) True AMCG00005438
AMCG00005462 mRNA upstream 33711 1754913 ~ 1774451 (-) True AMCG00005462
AMCG00005420 mRNA upstream 81715 1802917 ~ 1808080 (-) True AMCG00005420
AMCG00005421 mRNA upstream 118365 1839567 ~ 1857205 (-) True AMCG00005421
AMCG00005431 mRNA upstream 228019 1949221 ~ 1956060 (-) True AMCG00005431
AMCG00005488 mRNA upstream 336780 2057982 ~ 2059253 (-) True AMCG00005488
TU191734 other downstream 93186 1612773 ~ 1615497 (-) False G152271
TU191743 other downstream 201055 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 336946 1371383 ~ 1371737 (-) False AMCG00005419
TU191554 other downstream 449757 1219327 ~ 1258926 (-) False G152133
TU191268 other downstream 1644955 62621 ~ 63728 (-) False AMCG00005407
TU191946 other upstream 476152 2197354 ~ 2329684 (-) False AMCG00005532
TU192197 other upstream 1154084 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 1350658 3071860 ~ 3090714 (-) False G152645
TU192573 other upstream 2567463 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 3579567 5300769 ~ 5302198 (-) True G153130

Expression Profile