RNA id: AMCG00005471



Basic Information


Item Value
RNA id AMCG00005471
length 285
RNA type mRNA
GC content 0.61
exon number 2
gene id AMCG00005471
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 986631 ~ 986935 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTGGACTCTGGCTCACTGGGAATCTCAGCCTGGCATCAGAGTGGCGCCGTGCCTGGGACTCTCGAGCCGTGGAACCTGCTGCTAATCTCAAGCGCTCGAGCAGCGGAGTTAAGTGTAGAGGCCGTGTATAACGAATGGGTACTGAGACGGGGCCACAGCGCTATGACTCCCCACCACGCGCAGGACGCGGCTGTCAGGGAGATCTTCGACATTGCCGGGTCACAGCTTCACAGCGCTGTGGGCCGGGATCGAGCGGGGGGGCCTGATAATGCCACACTATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU191346 lncRNA upstream 295695 690659 ~ 690936 (+) True G151978
TU191335 lncRNA upstream 449939 535895 ~ 536692 (+) True G151968
TU191331 lncRNA upstream 626339 360093 ~ 360292 (+) True G151964
TU191330 lncRNA upstream 630771 355581 ~ 355860 (+) True G151963
TU191294 lncRNA upstream 738512 175252 ~ 248119 (+) True G151941
TU191435 lncRNA downstream 27143 1014078 ~ 1014380 (+) True G152040
TU191451 lncRNA downstream 70250 1057185 ~ 1057395 (+) True G152053
TU191523 lncRNA downstream 258096 1245031 ~ 1253959 (+) True G152111
TU191630 lncRNA downstream 471219 1458154 ~ 1458747 (+) True G152196
TU191632 lncRNA downstream 474789 1461724 ~ 1461939 (+) True G152198
AMCG00005472 mRNA upstream 1672 984690 ~ 984959 (+) True AMCG00005472
AMCG00005468 mRNA upstream 2256 973630 ~ 984375 (+) True AMCG00005468
AMCG00005450 mRNA upstream 24051 958000 ~ 962580 (+) True AMCG00005450
AMCG00005453 mRNA upstream 30210 953230 ~ 956421 (+) True AMCG00005453
AMCG00005449 mRNA upstream 39399 935734 ~ 947232 (+) True AMCG00005449
AMCG00005470 mRNA downstream 413 987348 ~ 987707 (+) True AMCG00005470
AMCG00005469 mRNA downstream 1692 988627 ~ 998834 (+) True AMCG00005469
AMCG00005463 mRNA downstream 18028 1004963 ~ 1013393 (+) True AMCG00005463
AMCG00005467 mRNA downstream 40263 1027198 ~ 1030499 (+) True AMCG00005467
AMCG00005465 mRNA downstream 43944 1030879 ~ 1036031 (+) True AMCG00005465
TU191336 other upstream 449268 536751 ~ 537363 (+) True G151969
TU191334 other upstream 586766 398925 ~ 399865 (+) True G151967
TU191585 other downstream 380079 1367014 ~ 1367956 (+) True G152159
TU191589 other downstream 389533 1376468 ~ 1379302 (+) True AMCG00005418
TU191729 other downstream 759025 1745960 ~ 1748934 (+) True G152267
TU191823 other downstream 812876 1799811 ~ 1803903 (+) True G152337
TU192049 other downstream 1516975 2503910 ~ 2510676 (+) True AMCG00005481

Expression Profile