RNA id: AMCG00005472


Basic Information

Item Value
RNA id AMCG00005472
length 270
RNA type mRNA
GC content 0.62
exon number 1
gene id AMCG00005472
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 984690 ~ 984959 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGGCGGTGCGATCCGGCGTCGGCCCACTTCCTGTGCACGGACCTGGCCCGCGTCGGGTCGAGTTTGACCTTGTGCAAGTTCATCTGTTACCTTGTCCCCCTCAGCTCCCTTGTCTCTGCTTATACGACCAGCACCCCAGACGTAAACCCCTGGCCCGGCCCCCCACAGCGCTGCCCGCCTTAGAGTTCACCCCGAGAGCGTCTGGCTCCGGGGCTCTTGGCTCTGCCTGTGTATCGGGCTCCCCTCAGATATCTGTGTATTGCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191346 lncRNA upstream 293754 690659 ~ 690936 (+) True G151978
TU191335 lncRNA upstream 447998 535895 ~ 536692 (+) True G151968
TU191331 lncRNA upstream 624398 360093 ~ 360292 (+) True G151964
TU191330 lncRNA upstream 628830 355581 ~ 355860 (+) True G151963
TU191294 lncRNA upstream 736571 175252 ~ 248119 (+) True G151941
TU191435 lncRNA downstream 29119 1014078 ~ 1014380 (+) True G152040
TU191451 lncRNA downstream 72226 1057185 ~ 1057395 (+) True G152053
TU191523 lncRNA downstream 260072 1245031 ~ 1253959 (+) True G152111
TU191630 lncRNA downstream 473195 1458154 ~ 1458747 (+) True G152196
TU191632 lncRNA downstream 476765 1461724 ~ 1461939 (+) True G152198
AMCG00005468 mRNA upstream 315 973630 ~ 984375 (+) True AMCG00005468
AMCG00005450 mRNA upstream 22110 958000 ~ 962580 (+) True AMCG00005450
AMCG00005453 mRNA upstream 28269 953230 ~ 956421 (+) True AMCG00005453
AMCG00005449 mRNA upstream 37458 935734 ~ 947232 (+) True AMCG00005449
AMCG00005452 mRNA upstream 51270 926198 ~ 933420 (+) True AMCG00005452
AMCG00005471 mRNA downstream 1672 986631 ~ 986935 (+) True AMCG00005471
AMCG00005470 mRNA downstream 2389 987348 ~ 987707 (+) True AMCG00005470
AMCG00005469 mRNA downstream 3668 988627 ~ 998834 (+) True AMCG00005469
AMCG00005463 mRNA downstream 20004 1004963 ~ 1013393 (+) True AMCG00005463
AMCG00005467 mRNA downstream 42239 1027198 ~ 1030499 (+) True AMCG00005467
TU191336 other upstream 447327 536751 ~ 537363 (+) True G151969
TU191334 other upstream 584825 398925 ~ 399865 (+) True G151967
TU191585 other downstream 382055 1367014 ~ 1367956 (+) True G152159
TU191589 other downstream 391509 1376468 ~ 1379302 (+) True AMCG00005418
TU191729 other downstream 761001 1745960 ~ 1748934 (+) True G152267
TU191823 other downstream 814852 1799811 ~ 1803903 (+) True G152337
TU192049 other downstream 1518951 2503910 ~ 2510676 (+) True AMCG00005481

Expression Profile