RNA id: AMCG00005473


Basic Information

Item Value
RNA id AMCG00005473
length 2374
RNA type mRNA
GC content 0.57
exon number 4
gene id AMCG00005473
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1059253 ~ 1062795 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGAAGTAGGAAgcagattaaaataatgttgcCGGAAGTGAGTTAGTGACCGAAAACCTGTGCCTTTAAGTAAAAGTTTATTCGGCCCCTGATATCGGGTGTAGAATTCGCCTCACAGTTTTAAACATCCTGCCTAATCGTGTAATTTATGACTTGTGCTTAGTAGAAAAAAGATACACACAGGCAATGGACCCGACAAAGCTCCTACGGCAGTGTCTGCACAGGGCCAGAGAGGTGCTGCCGGCGGGCGAGCTGACGAGCGGCGCGGCTCTGGCCGTCGCGATATCGGCAGCGGTGTACATCGCCACGGCTCGCTTCAGTGTCGCTCCGGAGGTGCTCAGCCTGGGGCCCGGCGCCCTCGCAGACTGGCACGTGCACAAGCTGGTGACCTACTCCTTCTGCCACACGGACCcgtggctgctgctgctacagGCCGGCGCACTGTGTCTGTTCGGCTGCGGCCTGGAGCGCAGCGTGGGCACGGCCCGGTTCtgctgcctgctgctgctgctctccgGGTGGACCGGGTTCCTGCACgccctgctggagctgctgctgttcGGCCGGGCAGGGGGCGGCTCGGTGCACGGCCTCCTGCCCGTGACCCTCGCAATGGTGGGCATGGCCACCGTGCGCTCACGGATCCGCCGGGCACTGCTGTGCGGGGTGAACGTGCCCCGCGCCGCCCTGCCGTGGCTGTTCCTCCTCGCCTCGCTGCTCGTCCCCAGTGCCAGCTTCCTCTGCAACCTCGTGGCTGTCCTGGTGGGACAGGCCTATGGAGTGGGCAGGTGTTTCCTGCTGGACGTGTCCGAGACGAGGGCCTGTGTCCTGGATAAGACGGTGCCCTTCAGGCTGCTGAGGAGGCTGGGAGTGGCGGTCTATGTCCCCGCGTCGGTGCAGGAGAGGCGGACAGCTCTGCATAAACCACTCACTCCGGCAGCCGGTTCCTATCCAGTCCAAGTCTACGCCCCTGTGTCGGCCATCCCGCCCCAGCAGTCTCTGTCCCAGAGCTATGAGGGCTGGCAGAACTCTCCCTACAGCCCGGGCAGCTACTTCCCTCCTGCACCCCATCATGCTCACGGTCATGGGCACACAGTCCACCAGAACACGGGCAGCCAGCCGGGACACGGAGGCTGCTGTGGGCACGCGCACTCCAGCCCCTCTGCCCCAACCCCTGGCCACCACGGCAGCTACTCTTTCCCCTCTGTGCAGCCTGGAGGGCCAGTGCACTTCTCAGGAGGGCCGTCCCTAGCGCCCAGCCTGGTCAATGCTGGGGCCCACGTGGGGCCCCCTTCAGTGGGCATGGCAGGTGTGAGCTGGCCGGGGCAAACCGTGCACAGCCCTGCTGGACTGGTGGTAAAATAGACCTTCTGCTTCTCTTCCCCTGACTGGTGCGATCGGTTGACAACGGCCTGTGGGGCAGTCCTGCAGTGTGGGACACCCCGGCAGCTGGCGAACGTGGCCACCCACATCGGAAgttaggaaattaaaaacatcacactacatttaaaactaaattaaaaataattccatCAAAGAAACTCTGCTGCCAGTTTTTGGCTCCGTGACAAAGCACTTTCTGAAGCTGAGTCTCCAGCATTGCCTTGTGTTCCCTCCACACCTGCGCACAGTGTCCGAATCCGTCGAGACACGGGAGGGTGGCTGACCGTGTGggtgtgggttttgttttttatgcatttttatgaaagtgtaaatattcatttttttctaacaGGTGTATAAACATAAAAACCTTTCCTATTCAAAGCATTTACCTCTCTCGTGTGGAATGCCTTTTCATCCCCCATATTCAGTCAGCTAAGCTttacttgaaaaacaaaaacaaacaaaaacactcactACAACTTCCACACAATACTTAATCTCCATTGTGAAGGACTTTCCAAGTGAAATGTAATCCGCGTGAAAGGTCTTGCAGGTGAACGCAGCAGTGCAGCCTGcggggggggcagtgtgtgCGTTTCAGGGGCAGTGTAGCAGAGGGACAAACAGCATGGGGGGGTGTGGCGGCACACTGTTACAACGCCTGGCTTTTGCCGCTGTAACAAAACTGCTGGAATCTCTAGACACGAAGATGAAAGCAGCAGAACGTGAACCGAAGGAGAGGATGGATATCAAGgtttctttgtctgtttttatttgattttaaatattctccCTGTAATGACCCTGGCCACCAGCAGGAGGAGTATATACTCTGGTGACATCATGAACTCTGGGCTCTGAGCATCGCTGCCTGCCAGGAGCACAGACCCCTACAGTGATCGGCAGTGGGGGCTTGTGCTCCATGCCCAgcttatttaatcattttaaattctagTTATGAATGATCTGAAGGTACTTGGCATGTGA

Function

GO: NA

KEGG:

id description
K09652 RHBDD2, RHBDL7; rhomboid domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191479 lncRNA downstream 49514 998354 ~ 1009739 (-) True G152071
TU191347 lncRNA downstream 368311 690659 ~ 690942 (-) True G151979
TU191340 lncRNA downstream 681540 377355 ~ 377713 (-) True G151972
TU191337 lncRNA downstream 708931 346997 ~ 350322 (-) True G151970
TU191322 lncRNA downstream 726909 242154 ~ 332344 (-) True G151957
TU191494 lncRNA upstream 2664 1065459 ~ 1070656 (-) True G152085
TU191548 lncRNA upstream 156532 1219327 ~ 1258926 (-) False G152133
TU191558 lncRNA upstream 156532 1219327 ~ 1258926 (-) True G152133
TU191552 lncRNA upstream 194502 1257297 ~ 1335440 (-) False G152133
TU191612 lncRNA upstream 334546 1397341 ~ 1398392 (-) True G152178
AMCG00005475 mRNA downstream 7845 1036096 ~ 1051408 (-) True AMCG00005475
AMCG00005476 mRNA downstream 32004 1023035 ~ 1027249 (-) True AMCG00005476
AMCG00005474 mRNA downstream 38136 1014652 ~ 1021117 (-) True AMCG00005474
AMCG00005454 mRNA downstream 85534 971671 ~ 973719 (-) True AMCG00005454
AMCG00005388 mRNA downstream 186248 871157 ~ 873005 (-) True AMCG00005388
AMCG00005389 mRNA upstream 46806 1109601 ~ 1111890 (-) True AMCG00005389
AMCG00005417 mRNA upstream 236571 1299366 ~ 1300547 (-) True AMCG00005417
AMCG00005419 mRNA upstream 308547 1371342 ~ 1376473 (-) True AMCG00005419
AMCG00005427 mRNA upstream 369109 1431904 ~ 1436308 (-) True AMCG00005427
AMCG00005428 mRNA upstream 399437 1462232 ~ 1467875 (-) True AMCG00005428
TU191268 other downstream 995525 62621 ~ 63728 (-) False AMCG00005407
TU191554 other upstream 156532 1219327 ~ 1258926 (-) False G152133
TU191607 other upstream 308588 1371383 ~ 1371737 (-) False AMCG00005419
TU191743 other upstream 443145 1505940 ~ 1507628 (-) True G152277
TU191734 other upstream 549978 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 645888 1708683 ~ 1721202 (-) True AMCG00005461

Expression Profile