RNA id: AMCG00005474


Basic Information

Item Value
RNA id AMCG00005474
length 2676
RNA type mRNA
GC content 0.70
exon number 6
gene id AMCG00005474
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1014652 ~ 1021117 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGGGGATCCACAGCGCTCCCACCCGCAGCATCCGGCCCTTCAGGTCCAGCGAGGAGTACCTGTTCGCCATGAAGGAGGACCTGGCGGAGTGGCTGCGCGACCTGTACCGGCTGGACATCACGCTGGACACCTTCCTGGACGCGCTGGAGACCGGGGCCGTGCTGTGCCAGCTCGCCAACAGCATCACCGGCGCCGCCGAGACCTTCCGCCGGGAGTTCGGCTCCAGGGCGGCCCGGGTGCAGCTGCCCGGCTCCGGGGTCACCTACGTCGGCGCCGCCCAGCCAGGGACCTTCGTGGCCCGGGACAACGTGTCCAACTTCATCAGCTGGTGCCGGACCCAGATGCGCATTAAAGACGTGCTCATGTTCGAGACGGAGGACCTGGTTCTGCGCAAGAACGAGAAGCACTTCGTCCTGTGCCTGCTGGAGCTGGCGCGGCGGGCGGCCCGCTTCGGGATGGCCGCCCCGGTACTGATCCAGCTGGAGCGTGAGATCGAGGAGGAGATCCGGGAGGAGCTGCACCTGCCCCCCGAGGAGACCCCCCTGCCCAAACCGCAGCGCCGCCTGTCCGACTTCAAGAACCTGGATGAGATCGTGCAGTTCCTGGTGAGCCGCTGCACCTGCCCCACCCTGTTCCCCATGGTGAAGGTGTCGGAGGGCAAGTACAGAGTGGGCGACTCCAGCACACTGATCTTCATCAGGATCCTGCGGAATCACGTGATGGTCCGTGTGGGAGGAGGCTGGGACACGCTGGAGCACTACCTGGACAAGCACGACCCCTGCCGCTGCCCGGCCCTCGCTCACAAGCAGGCAAAGCTGGCGAGCCCCCAGCGCCCGTCTGCACCCAGCCACGAGATCATGGCCCGCCTGGCACCCAGCTCTGACGGTCAGGGCCGCCCCCAGCCCACCCTGCTGCTGAGCCGCGCTCagacccccccgccccccgtgCACTGGACATCCTCCGCCCCCCCCAGCAGCCTGAGGCCGGGCCGGAACAGCAGCCCCCCGCCCCGCGCCGCCTCCCCCGGCCCTCGACCCGCTACGGCCACGGGGCTCCGGCCGCCCACCCCCAGCagGACAGGCAGGCAGGTGACACGGGGGAGCCCCTCTCTGCGCCAGACCAGCAGCCTGCCCCGCCCAGCCCCCTCGCCCACCCCAGCGGCCCCTGCCGCCACACAGCCCAACCCCCCACGCCCCCGGACGCCCGTGGTTCTTCAGCGGCCGCGGAGCCAACTCTCCCTGACCCACCCACCGCCCCCCTCTGACCGGCCGCTGGGCCACTCCTGGACCCCGGAGCGGCTCACCTCCACAGTGAGGCAGAGTCCAGCCCCTGCCGGCGCCGCCCCCCAGAACAGAACTGGGCTGCAGAGGCAGGCTGGGCTCATGCTTCCAAACAGGCCCTCCACCCCTGTTCGCAGCCGCAGTCCCATCAAGGCCTTGATCTCCCCACAGCAGCAGCCCCCCAGAGATGTGCCCCTCCGCAGACCAGCCAGCACTCCACCCAGCCCGGCCCAGCCCAGGCCCGGCACACCCGTCATTAGAACGACAGGAGGGCATCCGGCAGAGGGCAGGGGCACTAGCGGCAGCTCCGCAGCGCCCACTGGCAGCAGCTCTGTGATGAACGGAGGAGGCAGGCCGGGCGCCAGGCAGCCCAGAGAGGTCAGGGCGTGGGCCGGTGGAGACACGGTGTGGCTCGGTGTGACCCAGCCCAGCAACAGCAACTggaacaacagcaacaggggCGACGGTGTGCCACGGCCCCGGGTTCAGAGCGAGGCCAAGCCGGACAGGGGGCAGCTCTTCACCCCGCCGCCCCTGAGCCCCGAGCAGGAGAGACGTCTGTACCGCAGCCTGGAGCACGAGATCCTGGCCAACCTGCAGCAGCTGGCCCTGGAGTCGGACGACAGCCTCAgcgaggagggaggggggggctCCTGCACCCCAGACACGGCCCCTCCTGTTGAGGAGCACCCCCCGGAGAGCGCTCCCACGGCCCCCCGCAGCCCATCCCCGAGGCCGGTGGCATCCCCTCCCAAGCCCCCCCAGGACCAGGCCAGCTTCAGCGCCGTGGTGGCCGAGCTCTCCCGGGGCCCCCGCTCGCTCCGCAGGGTGGACGTGCAGCGCTGGGTGGCCCAGATTCCAGGCGGCCCTGTGGGAAGTGGTCCGGTGGAGCCCGAACCGGACGGGCTGGTCGTCCCCCGGCCCCTCAAGGCAAGCTCCTGGTCTTCGCTGGGGTCCAGCCTGGAGTGGAGGGAGCAGACGGGCGAGGAGGGGGGTGCGGAGCATGCAGCCAGTGCTAAGGCCAGGGCCCCGGACGGCCCCTCAGAACGTCCAGCGAAGTCCAGAACCCCATCCTTCAAGCAGAGGAGGGCCCTGAAGCAGCCAGAGAGGGTGCCCTCCATTTACAAGCTGAAGCTGCGGCCCAAAGTGCGCCCCCGCCGGGACCACCGCCCACACAGCAGGCCATCCAAGATCCCCACGCCCGTCTCCTACCGCCAAGCGCAGGCCGACCGTGCGGCCCGAGAGGAACGCAAGCCCCCCGGCAAAACGCCCCCCCGCCGCCCACACAGCTCTCGGGGCTCGTCCCCCATGGGCTCCGAGGAAGAGGCGTGGCCCCCCCTGAACAACCCTGCAGAGACGGTAGCGGGGAGAGACCAGGAGTCCTGGGTCTGA

Function

GO: NA

KEGG:

id description
K24627 GAS2, GAS2L; growth arrest-specific protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191479 lncRNA downstream 4913 998354 ~ 1009739 (-) True G152071
TU191347 lncRNA downstream 323710 690659 ~ 690942 (-) True G151979
TU191340 lncRNA downstream 636939 377355 ~ 377713 (-) True G151972
TU191337 lncRNA downstream 664330 346997 ~ 350322 (-) True G151970
TU191322 lncRNA downstream 682308 242154 ~ 332344 (-) True G151957
TU191494 lncRNA upstream 44342 1065459 ~ 1070656 (-) True G152085
TU191548 lncRNA upstream 198210 1219327 ~ 1258926 (-) False G152133
TU191558 lncRNA upstream 198210 1219327 ~ 1258926 (-) True G152133
TU191552 lncRNA upstream 236180 1257297 ~ 1335440 (-) False G152133
TU191612 lncRNA upstream 376224 1397341 ~ 1398392 (-) True G152178
AMCG00005454 mRNA downstream 40933 971671 ~ 973719 (-) True AMCG00005454
AMCG00005388 mRNA downstream 141647 871157 ~ 873005 (-) True AMCG00005388
AMCG00005387 mRNA downstream 613855 398920 ~ 400797 (-) True AMCG00005387
AMCG00005391 mRNA downstream 639640 350765 ~ 375012 (-) True AMCG00005391
AMCG00005395 mRNA downstream 746962 260508 ~ 267690 (-) True AMCG00005395
AMCG00005476 mRNA upstream 1918 1023035 ~ 1027249 (-) True AMCG00005476
AMCG00005475 mRNA upstream 14979 1036096 ~ 1051408 (-) True AMCG00005475
AMCG00005473 mRNA upstream 38136 1059253 ~ 1062795 (-) True AMCG00005473
AMCG00005389 mRNA upstream 88484 1109601 ~ 1111890 (-) True AMCG00005389
AMCG00005417 mRNA upstream 278249 1299366 ~ 1300547 (-) True AMCG00005417
TU191268 other downstream 950924 62621 ~ 63728 (-) False AMCG00005407
TU191554 other upstream 198210 1219327 ~ 1258926 (-) False G152133
TU191607 other upstream 350266 1371383 ~ 1371737 (-) False AMCG00005419
TU191743 other upstream 484823 1505940 ~ 1507628 (-) True G152277
TU191734 other upstream 591656 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 687566 1708683 ~ 1721202 (-) True AMCG00005461

Expression Profile