RNA id: AMCG00005475


Basic Information

Item Value
RNA id AMCG00005475
length 4146
RNA type mRNA
GC content 0.55
exon number 15
gene id AMCG00005475
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1036096 ~ 1051408 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCTGTGTCTTGTCCTCCGCAGCGCTGCTTATTGCCATGGCGGATTCTGACACGGAGCGCCAGCCCCCGGAGGCCGTGGCCGCGGACGAGCCCTTCCTCACCTCTCTGGACCTGTTCCTGTTCTCCCTCATCGCCGGCCTGCTCATCTACTGGTTCATCTTCCgcaagaagaaggaggagatcCCGGAGTTCAAGCCGCTGCCCATACAaacGGCTGCTGCCCGGGAGACCAGTTTCAttgaaaagatgaaaaaaacgGGCAAGAACATCGTGGTGTTCTACGGCTCTCAAACTGGCACTGCGGAGGAGTTTTCCAACCGGCTGTCCAAAGACGCCCATCGCTATGGGATGAGGGGAATGGCGGCCGACCCCGAGGAGTACGACATGTCTGAGCTCTCCCGCCTCACCGAGATCGAGAACTCCATCTGTGTGTTCTGCATGGCCACCTACGGGGAGGGAGACCCCACGGACAACGCCCAGGACTTCTACGACTGGCTCCAGGAGGTGGACGTCGACCTGTCAGGTGTCAACTTCACGGTGTTCGGGCTGGGGAATAAGACGTACGAGCACTACAACGCCATGGGGAAGTATGTGGACAAGAGGCTGGAGGAGCTGGGTGCGCAGAGGATCTTTGACCTGGGCATGGGCGACGACGACGCCAAccTGGAAGAGGACTTCGTCTCCTGGCGGGAGCAGTTCTGGCCCGCTGTGTGCGAGCACTTTGGGGTGGAGGCGACCGGAGACGAATCCAGTATCCGTCAGTACGAGCTGGTGGTCCACACTGACATGCACACGAGCAAGGTGTACAGCGGGGAGCTGGGCCGGCTGAAGAGTTTCGAGACGCAGAAGCCGCCCTTTGACACCAAGAACCCCTTCCTGGCGTCGGTCACGGCCAACAGGAAGCTGAATAAGGGCGGCAGCCGACACCTCATGCACCTGGAGCTGGACATCACGGGCTCCAAGATCAGGTACGAGTCCGGAGACCACGTGGCGGTGTACCCTGTCAACGACTCGGCCATTGTCAACAAGATCGGAGAGCTGCTCGGCGTGGACCTTGACACCGTAATCTCGCTCAACAACCTTGACGAGGAGTCCAACAAGAAGCACCCGTTCCCCTGCCCCACCACATACCGCACGGCGCTCACTCACTACCTGGACATCACCAGCACACCGCGAACCAACGTGCTGTATGAGCTGGCGCAGTACGCCACCGAGCCCAAGGAGCAGGAGACCCTGCGTAAGATGGCCTCCTCCTCGCCTGAGGGCAAGGGTCTGTACAACAGCTGGGTGCTGGAGGCCAAGCGCAACATCCTGGCCATCCTGCAGGACATGCCCAGCCTGCGGCCGCCCCTGGACCACCTGTGTGAGCTGATGCCCCGCCTGCAGGCGCGGTACTACTCCATCGCCTCCTCCTCAAAGGTTCACGCCAACTCCCTGCACATCTGCGCCGTGGTGGTGGAGTATGAGACCAAGACGGGCCGTGTGAACAAGGGCGTGGCCACCAACTGGCTGAAGAACAAGGTGGTGACGGACAACGGGCACAAGTCCACCGTGCCCATGTACGTCCGGAAGTCGCAGTTCCGGCTGCCCTTCAAAGCCAGCAACCCGGTGATCATGATCGGGCCGGGCACGGGCATCGCTCCCTTCATGGGCTTCATCCAGGAGAGGGGCTGGCTGAAGGAGCAAGGCAAGGAAGTGGGTGAGACAGTGCTGTACTACGGGTGCCGCTATAAGAACGAGGATTTCCTGTaccaggaggagctggagaagtTCCAGAAGAACGGGGTGCTCACCCAGCTCAACGTGGCCTTCTCCCGAGACCAGGAGCAGAAGAGGTACGTGCAGCACCTGCTGAAGGAGAACAAGGAGCACCTGTGGAAGCTGATCCACAGCGAGAACGCGCACATCTACGTCTGCGGGGACGCCCGCAACATGGCGAGAGACGTGCAGAACGCCTTCTACGAGATCGCCTCCGAGCTGGGGGGCCTGGCGCACGCCCAGGCGGTCGACTACATCAAGAAGCTCATGACCAAGGGACGCTACTCGCAGGACGTCTGGAGCTAAACGGGGTCCCCTGCGCCGGCCAGCAGGGCTTCGGAGGGGGGTGGCGGAGTCGGTTTagtttatgtgtttgtatgttttcctaCTTTGGGGGATGCGTGAAACGGTGGAGATTTCGTTGCTGCTGGTCTCTTAACGGTTATTGACCGGCACACACCAATGCAAGACCAGAAAAACGACAACAAAACTGTCTCGCATCTTCTTTAGCAAGTGTTAATAATTCTGATCTATTCTGAAGAACagatgtctctgtgtttaaacatAACAGTCCTGTTGTAGTGTCTTGATTATGCAGAAAAGTCGCCCAGTGAAGCGGAGACTTGAGTATCAGGGTGCAGAACGGGGCGGCTCTGAAGTCCGTTGGGAAGGGAGTCGGAGTCGAGCTTCAGGCTGCGTCTAGTGGAGAATAAATCATGTGATTGACGGGAGCAGGTCGAGGCAGGTGGACCTAATTTACAAACCTTTGTGTCTCTGATTGTGAGCATATGGCAAGTAGGGTTAATAACTAATCAAGTCAAGGGATTTTAAAGTATAACCTCTAAGGCCAGCTATGTGTATAGAAAGTACTGTAGACTTACTGAGCTCGAGGATCCGCAGCGTCGCTCGTGAAGTGGAAAGGGTCACGTGGCCGAGGACTCGTGGGACGGATGGGTGGATGCATGGTTAGTGTGCCAGCTGGTGTTTCTGTAGCTCTGTGCGTCTGTGCAGGGACGGCCGCCTTCCCCATCATCAGCTCTGTCTTCTGTCTCGTTGTAAGCACTCTAGTTTCAGTGTAAATACCGAAAAGTACTGTGCAGTCttaggattttaaaataacaggTTTAGCAGATGATGTCTGGGACATGTGACTCGAGCCGGGCTGGTCGGCATTATGACTGACCGCTCCATTGCACGCTGGCGCTACGGGGTTGTAATCTGGTACAGAAGGGACCGGGGGCTGGACTCCACGCTGATGGCCGCAGGGTCTCAAGGGGTTCCCTCCACCCGGGCCTTCAGCTACTGATCTGATTTAAAGCTGGTCGGCGTGATCAGAACGTTAGGACATCCATTATTCAAGAGGGAGAACTTCTGGTGCGGTTGTGTACGTTGTGTGAAGTTCTTGAAAGAGGTCCAGTTGGATGGAAAACCCAAAGACCACATGGCCCTCAAGAGTCTGACAGCCCTGAAACTGACCAGATCACATGGAAGAAGCCCCACATAGAGCAAAGAGTTGTCTGTTTACATTGTCGATCTGGCTGAGGATATGCATTTTCCACTACAGTGCCATTGGGAGGGACCAACAGTCAAACCAGgagtgaatgagtgtgtgtgaatgcatatatatatatattttaaagctacaAAGAAAACCACTAAATAAGACCTACATAAGAAGACAGAGGTCTGATAAAGTGCCGTCCAGCTCTGGTGAGACGAGGCGATGAACTTTTCCCCGTAATCgtgagtgaatgagtgtgtgtgatcAGAGCGCAGTAGTGTACAGGGATGCACCGTATATGGAGGGATTGGTCTTCACTGCCCTGTGTAAAATGCCAGACTGGCGCAAGGTGCCCGCTTGCACCGCCTGCCGCGTCAGAGGGCAGGCAGCGGCCATGTGCCGGAGTTTCCCATTGAAACGCAGGCTGTGTAGCGTGTTTAAACCATGAGTGAATTTGATGGCAGTCGTGTCCGGGACTGGATGCATATCTGCATGGACACATTTTTATCCGCTGGCTTTTATGATATGCAATGACTGATCACGATATCAAACGATGCATCACAAACGCTGTGCTTTCATTATTAATGTTGGATTCGGTTGGTTCCTGTCAGTGGTACGTGGTGGCCCGGTTTCGGCagctgtgtgtggctgtgtgtgtgcgccgtGACTCACGCGGGAGGAAGCGGACGCCCAGCCTGTGCCTTTACTCGTATGCTGGTGCGCCCGTCCCTCCTCCAGAAAACCCACCACAAGTTGCATTATTGAGAATGGGGAGCGGGGGGGTCCTTTCAAAGTCCTGTTACGTGTTCTCTGTCCCAGCTTGATCCAGTTTTATATGCAATTAaatggttttcctttttaaaaaaataaattaacaaattctA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0003958 NADPH-hemoprotein reductase activity molecular_function
GO:0010181 FMN binding molecular_function

KEGG:

id description
K00327 POR; NADPH-ferrihemoprotein reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191479 lncRNA downstream 26357 998354 ~ 1009739 (-) True G152071
TU191347 lncRNA downstream 345154 690659 ~ 690942 (-) True G151979
TU191340 lncRNA downstream 658383 377355 ~ 377713 (-) True G151972
TU191337 lncRNA downstream 685774 346997 ~ 350322 (-) True G151970
TU191322 lncRNA downstream 703752 242154 ~ 332344 (-) True G151957
TU191494 lncRNA upstream 14051 1065459 ~ 1070656 (-) True G152085
TU191548 lncRNA upstream 167919 1219327 ~ 1258926 (-) False G152133
TU191558 lncRNA upstream 167919 1219327 ~ 1258926 (-) True G152133
TU191552 lncRNA upstream 205889 1257297 ~ 1335440 (-) False G152133
TU191612 lncRNA upstream 345933 1397341 ~ 1398392 (-) True G152178
AMCG00005476 mRNA downstream 8847 1023035 ~ 1027249 (-) True AMCG00005476
AMCG00005474 mRNA downstream 14979 1014652 ~ 1021117 (-) True AMCG00005474
AMCG00005454 mRNA downstream 62377 971671 ~ 973719 (-) True AMCG00005454
AMCG00005388 mRNA downstream 163091 871157 ~ 873005 (-) True AMCG00005388
AMCG00005387 mRNA downstream 635299 398920 ~ 400797 (-) True AMCG00005387
AMCG00005473 mRNA upstream 7845 1059253 ~ 1062795 (-) True AMCG00005473
AMCG00005389 mRNA upstream 58193 1109601 ~ 1111890 (-) True AMCG00005389
AMCG00005417 mRNA upstream 247958 1299366 ~ 1300547 (-) True AMCG00005417
AMCG00005419 mRNA upstream 319934 1371342 ~ 1376473 (-) True AMCG00005419
AMCG00005427 mRNA upstream 380496 1431904 ~ 1436308 (-) True AMCG00005427
TU191268 other downstream 972368 62621 ~ 63728 (-) False AMCG00005407
TU191554 other upstream 167919 1219327 ~ 1258926 (-) False G152133
TU191607 other upstream 319975 1371383 ~ 1371737 (-) False AMCG00005419
TU191743 other upstream 454532 1505940 ~ 1507628 (-) True G152277
TU191734 other upstream 561365 1612773 ~ 1615497 (-) False G152271
TU191793 other upstream 657275 1708683 ~ 1721202 (-) True AMCG00005461

Expression Profile