RNA id: AMCG00005477


Basic Information

Item Value
RNA id AMCG00005477
length 3303
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00005477
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2766546 ~ 2778432 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCAGCTTTAGCAGTACTTTAACTTCAGAGATCAGGGTAGGAGATAGTGAGGGAGTTTTCAAGTGTCCAGAAGACCAACTGCCTCTGGACTATGCAAAGATCTACCCCGACCCTGAACTGGAGCAACAGATCCTGCTGCTGACCATTCGCTGCATTCACAGTGAGGAGGGCTGCCGCTGGACCGGACAGATGAAGCAGCTACAGGGTCACTTCTCCACGTGTGCTTTCAACGTGATCCCCTGCCCCAACCGCTGCTCCATCAAGCTGACCAGGAGAGACCTCCCGGACCACCTGCAGCATGACTGCCCAAAGCGCAAGGTCAAGTGCGAGTTCTGTGGCAACGAGTTCACTGGCGAGGCCTACGAGAACCACCAGGGCATCTGTCCCCAGGAGAGCGTATACTGCGAGAACAAGTGTGGGGCGCGGATGATGCGCAGACTTCTCTCCCAGCACAGCCTGGCCGAGTGTCCCAAACGCACCCAGCCCTGCAAATACTGTGGCAAAGAGTTCGTCTACGACACCATCCAGAACCACCAGTATCACTGCCCCCGCTTCCCAGTACAGTGCCCCAACCAGTGTGGTGCCCTGAATGTCGCCCGTGAGGACCTGTCCAGTCATGTGAAGGAGAACTGTGGCAGCGCCCTGGTTCTGTGCCCCTTCAAGGATGCAGGCTGCAAACACAGGTGTCCCAAAGTGGCCATTGGCAGGCACCTAGATGACACCACGAAGGCCCACCTGACCATGATGTGCAGTCTGGTGAGCAGGCAACGGCAGGAGATTGCGGAGCTGCGGCGAGAGGTGGAGGAGCTGTCGGTGAGCCACGACGGCGTGCTCATCTGGAAACTGGCCGACTACTCGCGCAAGCTGCAGGAGGCCAAGCTGAGGAACAACTTTGAGTTCTTCAGCCCGCCCTTCTACACCCACAAGTACGGGTACAAGCTGCAGGTGTCGGCCTTCCTCAACGGCAACGGCAGCGGCGAGGGCACCCACCTCTCCATCTACATCCGCGTGCTGCCCGGCGAGTACGACAACCTCCTGGAGTGGCCCTTCTCCTACAAGGTCACCTTCTCCATCCTGGACCAGAGCGACCCCTCGCTGTCCAAGCCCCAGCACATCACCGAGACCTTCAACCCCGACCCCAACTGGAAGAACTTCCAAAAGCCCTCTAGTTCCCGCAACTCACTGGATGAGAGCACTCTGGGCTTCGGCTACCCCAAATTCATCTCCCACGAGGAGGTCAAGAAGAGGAACTATGTGCGGGACAACTCCATCTTCCTCAAGGCCTCAATAGAGATCCCCCAGAAGATCATTGCTTGAGGGGGCTGTTTCACGAGGTCAGAAGACTAAAGACCCCGACCTGAGTCCGTTCAAAGAGCTCGCCCAGCCTCTTCCCGGTGTCAGTGTCTCGTCTGCCAACCGAGAAAAGGCCTGCAGACTGGCATGGTTTAGCTACTCAAGTACAGAAGCTGGCTTCTTCCTCAAAAGTGAGGTGAAAGTGTTTTGATTTGCGACCTTCACTTTCTGACTTAGTGTTCAATAATAGAAAGTCTTGGAGATTCAACAGTGCCTagattaatttttttcctccattttaCGTTCTCCCTTTTATACCAACTTGCTAAAGGAACGTTCCTGAATAGAGCATCCAACGAGTGGTTCTCAGATTTAGATTCGAGACCTGCTTCTTTCGATAGTATTCAATTGCCAATGGGAAGTGATTGTCTTGAATGCTCTCTGCTGTACAGTGAACCCTAATTTCAGTGTTTCTAAGGAGAAAATTCCTGCAGCAACAAAAGATCTAAAAAATGATCCGTTGACCGTAAATGCGCACATTCCAAACCTTGCAGTTTGCCTATCCCTTTCCTTTCTAGAGACTAGCGATACTAGGATTTCTGCTTCCATCCTGTTTTTCAAAGGAAATGCgcattaattaatcatttaaactactgtgaaagatttttttttctctctctcatcctctgCATATGTCAAAATAATCATCTTTACGCAAAAgacatgtctgtgtgtttcctgATACCAAACCTCTGATGGTAGCCAGACGTTTTGTTTCACACTTCTGGGGCCAAAGacgtgtgtttttgtgtttttggcaTGTGGAAGGCGGGGCCATCCTGTGATGTTAGGTCTGTGCGTCCCTCTGACGCACGATCGCTGGAGAACACGTATGACGTTTTTGCCATAAGCACGGTGCTAATGTAAGGTTGTCGCGAAGATTTTGAACAATCCCTACACTTGAAACGCAGTGTAAAACTCCAGGCAGCGTCATTATCGCTTAATAGCAGGAAAGAAAAGCCATCCAAACAGCGAGAGATTGTTTACAAATCCAGATGTTTCTAGTGTCATGGAGAGGGGACGAGCGAGGAAATAAAATCGTCGTGCAAAGCTGCAAACTTTGAAATTCTGTACTGTAACCTGTATTGGAAACCGACTAGGACCCCAAAGAAATCAGAACTTGGACCCACCAGCCAATCGCCAATCACAAATCATGGTCTTGATGGTGGCTTTTGATTTGTCAGATCAGAGGCTTCTTGCTTCTACCTGCGGGAAACCCCAATCAGTTCTCATATTAGTAAGATGTTTGTATTAGACCATGTTTCTGCCCAGGTTTTAGAAGTGTGATTCTGGCCTAATTTTGGCTCTAAACTAGGCAAACTACAATAGGCGTGCATCTAAAGGTCCATAGGACATTGTAAGGAGAAAACAATAGGATCTGCCTTTGAAATATTGAGAGAGATTAGGCATTGTGAAATACAGCAGTTAATGCCAGAATCTGAACTGTCAGAATAAAGAAGAAAGttgataatatattatatatatgtatactaatgtacaaagaaaacacgaaagcacatttttctgtactttttatTCCGAAAGAACAACCTTGATTTCATCTGTTTCTAATCACAACCTAATGTTTTGCAATGATTTTACgaaacaaaactgaagatttttgtagccatattttgcaaaatgtttttttaaactaaaacaaaaatgggagGATGATTCGTGTGGGGGAGGGAGGTTGAGTCGGGGAGCATGGCAATTGTATAAATGGTTTTAAGTTCTGTTTCatggaaatctgtattttttttttgtccgttcgttttttttttagatttttaatatcctgtctgtattatttctccttgtaaatgtatttatttttagcggCCACCTTGTCTTGGTAGAGTGAAAATGTGGCGTCTGCATTCTGATAGGTTGAATGATGACTGCTTGTCAAATtctttttggaaataaaatattactcaTTAA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0016567 protein ubiquitination biological_process
GO:0007165 signal transduction biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09848 TRAF4; TNF receptor-associated factor 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192001 lncRNA downstream 321449 2415072 ~ 2445097 (-) False G152473
TU192000 lncRNA downstream 321449 2442111 ~ 2445097 (-) True G152473
TU191989 lncRNA downstream 359161 2406525 ~ 2407385 (-) False AMCG00005517
TU191974 lncRNA downstream 447874 2294833 ~ 2318672 (-) True G152452
TU191973 lncRNA downstream 465794 2294833 ~ 2300752 (-) False G152452
TU192221 lncRNA upstream 293428 3071860 ~ 3090714 (-) True G152645
TU192229 lncRNA upstream 381625 3160057 ~ 3160364 (-) True G152652
TU192240 lncRNA upstream 405389 3183821 ~ 3184685 (-) True G152661
TU192244 lncRNA upstream 422753 3201185 ~ 3201687 (-) True G152665
TU192325 lncRNA upstream 528254 3306686 ~ 3308431 (-) True G152736
AMCG00005478 mRNA downstream 72442 2683637 ~ 2694104 (-) True AMCG00005478
AMCG00005505 mRNA downstream 114999 2650912 ~ 2651547 (-) True AMCG00005505
AMCG00005485 mRNA downstream 181253 2584850 ~ 2585293 (-) True AMCG00005485
AMCG00005517 mRNA downstream 356299 2407159 ~ 2410247 (-) True AMCG00005517
AMCG00005519 mRNA downstream 433650 2331855 ~ 2332896 (-) True AMCG00005519
AMCG00005496 mRNA upstream 32794 2811226 ~ 2821222 (-) True AMCG00005496
AMCG00005495 mRNA upstream 78845 2857277 ~ 2863981 (-) True AMCG00005495
AMCG00005491 mRNA upstream 94074 2872506 ~ 2890448 (-) True AMCG00005491
AMCG00005479 mRNA upstream 213985 2992417 ~ 3005846 (-) True AMCG00005479
AMCG00005480 mRNA upstream 372612 3151044 ~ 3151919 (-) True AMCG00005480
TU191946 other downstream 436862 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 1045344 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 1151049 1612773 ~ 1615497 (-) False G152271
TU191743 other downstream 1258918 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 1394809 1371383 ~ 1371737 (-) False AMCG00005419
TU192197 other upstream 96854 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 293428 3071860 ~ 3090714 (-) False G152645
TU192573 other upstream 1510233 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 2522337 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 3302803 6081235 ~ 6082866 (-) True G153342

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00016798 True 3072 mRNA 0.48 8 NC_007126.7 15516612 ~ 15593263 (+)
grasscarp (Ctenopharyngodon idella) CI01000053_02817187_02856529.mRNA True 2997 mRNA 0.48 8 CI01000053 2815866 ~ 2856648 (-)