RNA id: AMCG00005478


Basic Information

Item Value
RNA id AMCG00005478
length 1840
RNA type mRNA
GC content 0.55
exon number 14
gene id AMCG00005478
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2683637 ~ 2694104 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGTCTGCTGCGGCTCCACTCGATTGCTTTTCCTGGGAGGATTCACAGGAAGCGCTGCAGCACATTGTGAAGATAAAACATCAGTTTTGCGGCAGGATGGATCGATTAGCTCCTTTTGGAAATGATCCGTTTGACAAGCCGCCATGCCGGGGCTGCTCCTCCTACCTCACCGAGCCCTACATCAAGTGTGCCGAGTGCGGCCCCACTCCCTTCATGCTGTGCCTGCAGTGTTTCACCAGAGGGTTCGAATACAAGAAACACCAGAGTGACCATAAGTACGAGATCATGACCTCTGACTTCCCCGTGCTGGACCCTGGCTGGACAGCACTGGAAGAGATGGCCCTGCTGGAGGCAGTGATGGACTGTGGCTTTGGGAACTGGCAAGACGTAGCCAATCAGATGCGCACCAAGAGCAAGGAGGAGTGTGAGAGCCACTATATGAAGCACTTCATCAACAACCCCCTGTTCTCCTCCACACTGCTCAGCCTCCGACAGATGGAGGAGGCCCGCACCGCCGACACCGCCATCCCCTTCAGATCCACAGACGACCCCCCCAGACCCACGTTTGACTCGCTGCTCTCCAGAGACATGGCGGGGTACATGCCGGCCAGAGCGGACTTTGTGGAGGAGTTTGACAACTATGCAGAATGGGACCTGCGAGACATTGATTTTGTGGACGATGACTCCGATATTCTGCACGccctgaAGATTGCAGTGGTTGACATTTACCACTCCAGACTAAAGGAACGACAGCGCAGGAAAAAGATAATTCGTGACCATGGCTTAATCAATTTGAGAAAGTTTCAAAtccTGGAGAGACGCTACCCCAAAGAGGTGCAGGACCTGTACGATGCCATGCGCCGCTTCGCCAGGGTCTCGGGCCCCATCGAGCACGACAAGTTCATCGAAAGCCATGCTTTGGAGTTCGAGCTGCGGAGGGAGATCCGGAGGCTGCAGGAGTACAGGAGAGCGGGGATCCATGACGCCGGCCTCAATCCCGTGGTTTCCACCATCACTACCTCAGCAACAGGAAGGAGAAGCGCTCCCCCTCTGAACCTGACCGGCCTTCCAGGAACTGACAAACTCAACGACAAGGAGAAAGAGCTGTGCCAGGTGGTGCGCCTGGTGCCGGGGGCCTACCTGGAGTACAAGGCGGCCCTGGTGAACGAGTGCCGGCGGCAGGGCGGGTTGAGACTGGCGCAGGCCCGGGCGCTCATCAAGATCGACGTGAACAAGACGCGCAAGATCTACGACTTCCTCATCAAGGAGGGCTACATCAACAAAGCCTAGGGGTTCTGGATAGCACCGACCCCCCCCACAACCCCAACTCCTCCTGCAGTGCCAAGGGAAGGCAGACCCGACAGCGAGGAATCTGTTGGCTCCCTCTCATCGTCGGTCTGAACGGGCTGCTCTGTTGTGACGCTGAAGAAGTGCACTGTGGGTAGACTGAGGATGCTGAGGCTCTGTTCCTGGGGACCGCTCCCAGACCAGGCCTGGCTATGAACCCAGTTCCTTTTGTGGTGTTTTtactcctgttgttttttttgttttgtgtgtgtgtgtgtgtttttgttgtgtttttaagtcTTGGTTTGCCTTATCGCTACTGACATTAAATCCAAACTGACATGGAACTGAAATAAAGTTTCTCGTGTAATGAGGCTTTTGCCTCTGAGCCCCAGCTGTCCTCAGTCTTATCGAAGGGCTGAAGCTGTGGATGTCTGGTTTGTGCTCACTGTCTGCCCTTGCGTTTCAGTTTGATATGCCTGGCCGATACAGTCCTGGATtagccggggggggggggagtaagGAGAGGTGGGAGTGAATCCAGTAAcgaaa

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K11314 TADA2A, ADA2; transcriptional adapter 2-alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192001 lncRNA downstream 238540 2415072 ~ 2445097 (-) False G152473
TU192000 lncRNA downstream 238540 2442111 ~ 2445097 (-) True G152473
TU191989 lncRNA downstream 276252 2406525 ~ 2407385 (-) False AMCG00005517
TU191974 lncRNA downstream 364965 2294833 ~ 2318672 (-) True G152452
TU191973 lncRNA downstream 382885 2294833 ~ 2300752 (-) False G152452
TU192221 lncRNA upstream 377756 3071860 ~ 3090714 (-) True G152645
TU192229 lncRNA upstream 465953 3160057 ~ 3160364 (-) True G152652
TU192240 lncRNA upstream 489717 3183821 ~ 3184685 (-) True G152661
TU192244 lncRNA upstream 507081 3201185 ~ 3201687 (-) True G152665
TU192325 lncRNA upstream 612582 3306686 ~ 3308431 (-) True G152736
AMCG00005505 mRNA downstream 32090 2650912 ~ 2651547 (-) True AMCG00005505
AMCG00005485 mRNA downstream 98344 2584850 ~ 2585293 (-) True AMCG00005485
AMCG00005517 mRNA downstream 273390 2407159 ~ 2410247 (-) True AMCG00005517
AMCG00005519 mRNA downstream 350741 2331855 ~ 2332896 (-) True AMCG00005519
AMCG00005520 mRNA downstream 361994 2308678 ~ 2321643 (-) True AMCG00005520
AMCG00005477 mRNA upstream 72442 2766546 ~ 2778432 (-) True AMCG00005477
AMCG00005496 mRNA upstream 117122 2811226 ~ 2821222 (-) True AMCG00005496
AMCG00005495 mRNA upstream 163173 2857277 ~ 2863981 (-) True AMCG00005495
AMCG00005491 mRNA upstream 178402 2872506 ~ 2890448 (-) True AMCG00005491
AMCG00005479 mRNA upstream 298313 2992417 ~ 3005846 (-) True AMCG00005479
TU191946 other downstream 353953 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 962435 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 1068140 1612773 ~ 1615497 (-) False G152271
TU191743 other downstream 1176009 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 1311900 1371383 ~ 1371737 (-) False AMCG00005419
TU192197 other upstream 181182 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 377756 3071860 ~ 3090714 (-) False G152645
TU192573 other upstream 1594561 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 2606665 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 3387131 6081235 ~ 6082866 (-) True G153342

Expression Profile