RNA id: AMCG00005481


Basic Information

Item Value
RNA id AMCG00005481
length 1879
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00005481
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2503910 ~ 2510676 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCCGCTGCGGCGTGCGGCAGTGCGGAGGGCGGGGGAGGCACGATGTCTGACAGGAAGGCTGTGATCAAGAATGCTGACATGTCTGAGGACATGCAGCAGGATGCAGTGGACTGTGCCACCCAGGCCATGGAGAAGTACAATATTGAGAAGGACATTGCTGCCTACATCAAAAAGGAGTTCGACAAGAAGTACAACCCCACCTGGCACTGCATCGTGGGTAGGAACTTCGGCAGCTATGTGACACATGAGACGAAGCACTTCATCTACTTCTATCTGGGACAGGTGGCCATCCTCCTCTTCAAGTCTGGCTGAGCCGTGCCTTGCCGGCGAGAGAACCACTGGACTGTAATGCACTGATGGCTGATGCCACACCTCCCCACACACTtcagaaattataaaacaaaaaaaaaacaagcgaATACAAAACTGGCTGTGCGCGACTGCATGGactgtatacaatatttaatgtgtatatGTTGCAGTAAAAATCTTACTTTTCTTTAGTTGCCTGGAAGAAAATGTGAAGCAACAGGAagagatttttttgttaatgcttttattatttttgttattgcactgaagttgtaaaaaaataaataaaaaaatatatatataaaatttgcTTTAACGGTGGCCtttaagtgaaaataaagaatagtTCTAAAGTTAAAAGAATGTGTTAAGTCTACTAAACCTGAGGATCTGAGTGGAGTATAGAAAGGTGCATTATTCAGTGTTGAAGGTTTTGCTAGTACTGTCACTTAATCTTCCTCTGTTTTGTGATGTCTTGTCTTTGCAAAACGCAGCCATTCTGGTATTTTTAAAGCCGAAAAAAGAAATCTCAACTGGAATCTCATGCCtgtacaatgcattttaaagccGGTGGGGGAGAGTCATTGCTAGTCGTGAAAATTCTGCACATGTTGAAAATCTGCACAAATGTCAGGTTATTGTGGAATTTCGTTTTCAAACGGAGCGGTTATCTTGTCGCCGCAAGTCAGCAAGACGCTACACATTCTTGCTCAACCATTGTCAAGTGTACTTTTTGATCTCCTGAAAATGGCTTAGATTTAggattttgattatttttttgtatccaaGATTGCGAACTTCAGACTTCCAGAATTTAGAAATGGGTGTCCCAGTGCAGTACAAAAGAGCCTTGTAGTTTAGTGTGGGTTCAAATATTTTTCCCCTGCTTTGTCCTGAAGGCAGACATTTATGGAACAATTTAATTGGCATTTTGACTGAAATATGTGTGTGGGTTCCAGCTGTTACTCCTGGTGCATAGCGAAAAGGCTCACTTGTGAAAAAGGGAGGATGGTGGAAGTACTTCAATACTTTAACTAAGTTGCACGCAGTAAATGTATGCTTCGCAAACCCCACATGCCCGAGTTTATTCCAGGATAGGGGTAAAACCCTGACACCTGAACGCTTGGCTTACCTCCatcacaaaatgtatacatctaaCATGtatgaatgtgaaatgttaACTTGTTCTAATAGGAGCCAGACATTGAATGCATAAATATCAAATTATTGTCATTAATTGCTGCTCTGGTCACTTCTGTTGTagttttgatatttatttagcggtatttttattttgtgtgcaagATTCTATAGGTTCAATGGAGTGACGAACTTGTTTATCCCTTCGGAACAAATTGCTATCTATGAATGACATGTTTTACAAACTGAAGTATAATACCTTGTTTGGAATTCAGTTCTAcacctgggggtgggggtgtgttttgtatatttaaaaaaagatgtcaGCCACTGCCCATTTCAGACGATCCTGTACAGATTTCTGTCTTGACCCTATTCACATTCATTAAACAATGTGTGATCAACATTATTAAAAGCCACA

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0005875 microtubule associated complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043186 P granule cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191902 lncRNA upstream 180591 2255365 ~ 2323345 (+) True G152397
TU191834 lncRNA upstream 557136 1929455 ~ 1946800 (+) False AMCG00005429
TU191670 lncRNA upstream 987984 1509502 ~ 1515952 (+) False AMCG00005434
TU191632 lncRNA upstream 1041997 1461724 ~ 1461939 (+) True G152198
TU191630 lncRNA upstream 1045189 1458154 ~ 1458747 (+) True G152196
TU192219 lncRNA downstream 561283 3071950 ~ 3090655 (+) True G152644
TU192220 lncRNA downstream 561283 3071950 ~ 3090655 (+) False G152644
TU192232 lncRNA downstream 673154 3183821 ~ 3185332 (+) False G152655
TU192233 lncRNA downstream 674088 3184755 ~ 3186988 (+) True G152655
TU192234 lncRNA downstream 674088 3184755 ~ 3185332 (+) False G152655
AMCG00005483 mRNA upstream 2209 2495360 ~ 2501727 (+) True AMCG00005483
AMCG00005482 mRNA upstream 9699 2487213 ~ 2494237 (+) True AMCG00005482
AMCG00005512 mRNA upstream 19484 2480675 ~ 2484452 (+) True AMCG00005512
AMCG00005510 mRNA upstream 32085 2460248 ~ 2471851 (+) True AMCG00005510
AMCG00005511 mRNA upstream 46364 2447382 ~ 2457572 (+) True AMCG00005511
AMCG00005484 mRNA downstream 1555 2512222 ~ 2520954 (+) True AMCG00005484
AMCG00005504 mRNA downstream 35726 2546393 ~ 2565500 (+) True AMCG00005504
AMCG00005503 mRNA downstream 55722 2566389 ~ 2569710 (+) True AMCG00005503
AMCG00005502 mRNA downstream 72732 2583399 ~ 2638908 (+) True AMCG00005502
AMCG00005493 mRNA downstream 323830 2834497 ~ 2844701 (+) True AMCG00005493
TU191823 other upstream 700033 1799811 ~ 1803903 (+) True G152337
TU191729 other upstream 755002 1745960 ~ 1748934 (+) True G152267
TU191589 other upstream 1124634 1376468 ~ 1379302 (+) True AMCG00005418
TU191585 other upstream 1135980 1367014 ~ 1367956 (+) True G152159
TU191336 other upstream 1966573 536751 ~ 537363 (+) True G151969
TU192155 other downstream 334550 2845217 ~ 2849608 (+) True G152588
TU192254 other downstream 756075 3266742 ~ 3270839 (+) False AMCG00005498
TU192255 other downstream 756075 3266742 ~ 3270839 (+) False AMCG00005498
TU192563 other downstream 1772393 4283060 ~ 4284963 (+) False AMCG00005538
TU192612 other downstream 2049546 4560213 ~ 4561484 (+) False AMCG00005546

Expression Profile