RNA id: TU192049


Basic Information

Item Value
RNA id TU192049
length 2059
RNA type TUCP
GC content 0.42
exon number 3
gene id AMCG00005481
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2503910 ~ 2510676 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGGGGAGAGGCCGCCGCTCAGCCAATGGCAGCCGCTGCGGCGTGCGGCAGTGCGGAGGGCGGGGGAGGTATTTTAGCGGGGCAGATACCCGCAGATGAGCTACGAGCAAATCTGTACAGAGAGCAAACCGCAAAGCCGCTCAGCGAACCAGCAAAGCAGGCGAGCAGGACAGGGTTTTGTGGACCGTAAATCCTAAAATAACGTCAACCAAGGCACGATGTCTGACAGGAAGGCTGTGATCAAGAATGCTGACATGTCTGAGGACATGCAGCAGGATGCAGTGGACTGTGCCACCCAGGCCATGGAGAAGTACAATATTGAGAAGGACATTGCTGCCTACATCAAAAAGGAGTTCGACAAGAAGTACAACCCCACCTGGCACTGCATCGTGGGTAGGAACTTCGGCAGCTATGTGACACATGAGACGAAGCACTTCATCTACTTCTATCTGGGACAGGTGGCCATCCTCCTCTTCAAGTCTGGCTGAGCCGTGCCTTGCCGGCGAGAGAACCACTGGACTGTAATGCACTGATGGCTGATGCCACACCTCCCCACACACTtcagaaattataaaacaaaaaaaaaacaagcgaATACAAAACTGGCTGTGCGCGACTGCATGGactgtatacaatatttaatgtgtatatGTTGCAGTAAAAATCTTACTTTTCTTTAGTTGCCTGGAAGAAAATGTGAAGCAACAGGAagagatttttttgttaatgcttttattatttttgttattgcactgaagttgtaaaaaaataaataaaaaaatatatatataaaatttgcTTTAACGGTGGCCtttaagtgaaaataaagaatagtTCTAAAGTTAAAAGAATGTGTTAAGTCTACTAAACCTGAGGATCTGAGTGGAGTATAGAAAGGTGCATTATTCAGTGTTGAAGGTTTTGCTAGTACTGTCACTTAATCTTCCTCTGTTTTGTGATGTCTTGTCTTTGCAAAACGCAGCCATTCTGGTATTTTTAAAGCCGAAAAAAGAAATCTCAACTGGAATCTCATGCCtgtacaatgcattttaaagccGGTGGGGGAGAGTCATTGCTAGTCGTGAAAATTCTGCACATGTTGAAAATCTGCACAAATGTCAGGTTATTGTGGAATTTCGTTTTCAAACGGAGCGGTTATCTTGTCGCCGCAAGTCAGCAAGACGCTACACATTCTTGCTCAACCATTGTCAAGTGTACTTTTTGATCTCCTGAAAATGGCTTAGATTTAggattttgattatttttttgtatccaaGATTGCGAACTTCAGACTTCCAGAATTTAGAAATGGGTGTCCCAGTGCAGTACAAAAGAGCCTTGTAGTTTAGTGTGGGTTCAAATATTTTTCCCCTGCTTTGTCCTGAAGGCAGACATTTATGGAACAATTTAATTGGCATTTTGACTGAAATATGTGTGTGGGTTCCAGCTGTTACTCCTGGTGCATAGCGAAAAGGCTCACTTGTGAAAAAGGGAGGATGGTGGAAGTACTTCAATACTTTAACTAAGTTGCACGCAGTAAATGTATGCTTCGCAAACCCCACATGCCCGAGTTTATTCCAGGATAGGGGTAAAACCCTGACACCTGAACGCTTGGCTTACCTCCatcacaaaatgtatacatctaaCATGtatgaatgtgaaatgttaACTTGTTCTAATAGGAGCCAGACATTGAATGCATAAATATCAAATTATTGTCATTAATTGCTGCTCTGGTCACTTCTGTTGTagttttgatatttatttagcggtatttttattttgtgtgcaagATTCTATAGGTTCAATGGAGTGACGAACTTGTTTATCCCTTCGGAACAAATTGCTATCTATGAATGACATGTTTTACAAACTGAAGTATAATACCTTGTTTGGAATTCAGTTCTAcacctgggggtgggggtgtgttttgtatatttaaaaaaagatgtcaGCCACTGCCCATTTCAGACGATCCTGTACAGATTTCTGTCTTGACCCTATTCACATTCATTAAACAATGTGTGATCAACATTATTAAAAGCCACAggctttgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191902 lncRNA upstream 180565 2255365 ~ 2323345 (+) True G152397
TU191834 lncRNA upstream 557110 1929455 ~ 1946800 (+) False AMCG00005429
TU191670 lncRNA upstream 987958 1509502 ~ 1515952 (+) False AMCG00005434
TU191632 lncRNA upstream 1041971 1461724 ~ 1461939 (+) True G152198
TU191630 lncRNA upstream 1045163 1458154 ~ 1458747 (+) True G152196
TU192219 lncRNA downstream 561274 3071950 ~ 3090655 (+) True G152644
TU192220 lncRNA downstream 561274 3071950 ~ 3090655 (+) False G152644
TU192232 lncRNA downstream 673145 3183821 ~ 3185332 (+) False G152655
TU192233 lncRNA downstream 674079 3184755 ~ 3186988 (+) True G152655
TU192234 lncRNA downstream 674079 3184755 ~ 3185332 (+) False G152655
AMCG00005483 mRNA upstream 2183 2495360 ~ 2501727 (+) True AMCG00005483
AMCG00005482 mRNA upstream 9673 2487213 ~ 2494237 (+) True AMCG00005482
AMCG00005512 mRNA upstream 19458 2480675 ~ 2484452 (+) True AMCG00005512
AMCG00005510 mRNA upstream 32059 2460248 ~ 2471851 (+) True AMCG00005510
AMCG00005511 mRNA upstream 46338 2447382 ~ 2457572 (+) True AMCG00005511
AMCG00005484 mRNA downstream 1546 2512222 ~ 2520954 (+) True AMCG00005484
AMCG00005504 mRNA downstream 35717 2546393 ~ 2565500 (+) True AMCG00005504
AMCG00005503 mRNA downstream 55713 2566389 ~ 2569710 (+) True AMCG00005503
AMCG00005502 mRNA downstream 72723 2583399 ~ 2638908 (+) True AMCG00005502
AMCG00005493 mRNA downstream 323821 2834497 ~ 2844701 (+) True AMCG00005493
TU191823 other upstream 700007 1799811 ~ 1803903 (+) True G152337
TU191729 other upstream 754976 1745960 ~ 1748934 (+) True G152267
TU191589 other upstream 1124608 1376468 ~ 1379302 (+) True AMCG00005418
TU191585 other upstream 1135954 1367014 ~ 1367956 (+) True G152159
TU191336 other upstream 1966547 536751 ~ 537363 (+) True G151969
TU192155 other downstream 334541 2845217 ~ 2849608 (+) True G152588
TU192254 other downstream 756066 3266742 ~ 3270839 (+) False AMCG00005498
TU192255 other downstream 756066 3266742 ~ 3270839 (+) False AMCG00005498
TU192563 other downstream 1772384 4283060 ~ 4284963 (+) False AMCG00005538
TU192612 other downstream 2049537 4560213 ~ 4561484 (+) False AMCG00005546

Expression Profile