RNA id: AMCG00005485


Basic Information

Item Value
RNA id AMCG00005485
length 300
RNA type mRNA
GC content 0.60
exon number 2
gene id AMCG00005485
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2584850 ~ 2585293 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCAGAGCTCTGAAGCCCTTGTTGACAGGCTTGCGCAGCGCGGCGAGGATGGGCAGGCAGAATGCCACCGTCTTCCCCGAGCCACATGAGTGGGATGGCCTGCATCtggatgggggtgggggcttCGAAGCCGGCCTGGCGGATGTTCTGGATGATGCGCGGGTCGATGCCGTACTCCTCCTGGATCTGCTCGAAGGTGGTCATGGGGTCGGGGACGTCAGATCCGTGGACGTTTATCCTGTTCTGGTGCCGGATTTTATTGACCTGGACGAAGGGATTGAAAACACGGTGGACTGA

Function

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192001 lncRNA downstream 139753 2415072 ~ 2445097 (-) False G152473
TU192000 lncRNA downstream 139753 2442111 ~ 2445097 (-) True G152473
TU191989 lncRNA downstream 177465 2406525 ~ 2407385 (-) False AMCG00005517
TU191974 lncRNA downstream 266178 2294833 ~ 2318672 (-) True G152452
TU191973 lncRNA downstream 284098 2294833 ~ 2300752 (-) False G152452
TU192221 lncRNA upstream 486567 3071860 ~ 3090714 (-) True G152645
TU192229 lncRNA upstream 574764 3160057 ~ 3160364 (-) True G152652
TU192240 lncRNA upstream 598528 3183821 ~ 3184685 (-) True G152661
TU192244 lncRNA upstream 615892 3201185 ~ 3201687 (-) True G152665
TU192325 lncRNA upstream 721393 3306686 ~ 3308431 (-) True G152736
AMCG00005517 mRNA downstream 174603 2407159 ~ 2410247 (-) True AMCG00005517
AMCG00005519 mRNA downstream 251954 2331855 ~ 2332896 (-) True AMCG00005519
AMCG00005520 mRNA downstream 263207 2308678 ~ 2321643 (-) True AMCG00005520
AMCG00005521 mRNA downstream 283996 2284444 ~ 2300854 (-) True AMCG00005521
AMCG00005532 mRNA downstream 313527 2239623 ~ 2271323 (-) True AMCG00005532
AMCG00005505 mRNA upstream 65619 2650912 ~ 2651547 (-) True AMCG00005505
AMCG00005478 mRNA upstream 98344 2683637 ~ 2694104 (-) True AMCG00005478
AMCG00005477 mRNA upstream 181253 2766546 ~ 2778432 (-) True AMCG00005477
AMCG00005496 mRNA upstream 225933 2811226 ~ 2821222 (-) True AMCG00005496
AMCG00005495 mRNA upstream 271984 2857277 ~ 2863981 (-) True AMCG00005495
TU191946 other downstream 255166 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 863648 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 969353 1612773 ~ 1615497 (-) False G152271
TU191743 other downstream 1077222 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 1213113 1371383 ~ 1371737 (-) False AMCG00005419
TU192197 other upstream 289993 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 486567 3071860 ~ 3090714 (-) False G152645
TU192573 other upstream 1703372 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 2715476 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 3495942 6081235 ~ 6082866 (-) True G153342

Expression Profile