RNA id: TU192197


Basic Information

Item Value
RNA id TU192197
length 516
RNA type TUCP
GC content 0.68
exon number 3
gene id AMCG00005491
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2872506 ~ 2890448 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGATCTGACCCGTGCGGTGAACGCGCTCCCCCAGAACATGACGTCTCAGATGTTCAGCGCCATCGCCGCCGTCACGGGGCAGAACCAGAACCCCAACGCCACTCCGGCGCAGTGGGCGTCCAGCCAGTACGGCTACAGTGGCGGCAGCAGCGGCGGAGGAGGCGGCAGCAGTGCTTACCACGTCTTTGCCACCCCGGCCCAGCAGCCTATCGCCACTCCCCTGATGACCCCCAGCTACTCCTACACCACCCCCAGCCAGCAGGCCATCACCACCCCCCAGTACCCCAGCAGTGCCACGCCCCAGTCCTCCCACGGGCACCCGTCCTCATCCTCGTCTTCGTCCTCCCGGCACAGACAGCAGCCCAAGACGAACGCCCACACCGCCGTGGACTGGGGCAAGATGGCCGAGCAGTGGCTGCAGGAGAAGGAGGCGGAGCGGCGGAAACAGAAGACCAGGGTGACCCCGCGCCCCTCGCCCAGCCCCATGATCGAGAGCACGCCCATGTCCATCGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192001 lncRNA downstream 430189 2415072 ~ 2445097 (-) False G152473
TU192000 lncRNA downstream 430189 2442111 ~ 2445097 (-) True G152473
TU191989 lncRNA downstream 467901 2406525 ~ 2407385 (-) False AMCG00005517
TU191974 lncRNA downstream 556614 2294833 ~ 2318672 (-) True G152452
TU191973 lncRNA downstream 574534 2294833 ~ 2300752 (-) False G152452
TU192221 lncRNA upstream 195851 3071860 ~ 3090714 (-) True G152645
TU192229 lncRNA upstream 284048 3160057 ~ 3160364 (-) True G152652
TU192240 lncRNA upstream 307812 3183821 ~ 3184685 (-) True G152661
TU192244 lncRNA upstream 325176 3201185 ~ 3201687 (-) True G152665
TU192325 lncRNA upstream 430677 3306686 ~ 3308431 (-) True G152736
AMCG00005495 mRNA downstream 11305 2857277 ~ 2863981 (-) True AMCG00005495
AMCG00005496 mRNA downstream 54064 2811226 ~ 2821222 (-) True AMCG00005496
AMCG00005477 mRNA downstream 96854 2766546 ~ 2778432 (-) True AMCG00005477
AMCG00005478 mRNA downstream 181182 2683637 ~ 2694104 (-) True AMCG00005478
AMCG00005505 mRNA downstream 223739 2650912 ~ 2651547 (-) True AMCG00005505
AMCG00005479 mRNA upstream 116408 2992417 ~ 3005846 (-) True AMCG00005479
AMCG00005480 mRNA upstream 275035 3151044 ~ 3151919 (-) True AMCG00005480
AMCG00005501 mRNA upstream 473948 3349957 ~ 3365350 (-) True AMCG00005501
AMCG00005497 mRNA upstream 690828 3566837 ~ 3568504 (-) True AMCG00005497
AMCG00005524 mRNA upstream 707392 3583401 ~ 3604355 (-) True AMCG00005524
TU191946 other downstream 545602 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 1154084 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 1259789 1612773 ~ 1615497 (-) False G152271
TU191743 other downstream 1367658 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 1503549 1371383 ~ 1371737 (-) False AMCG00005419
TU192222 other upstream 195851 3071860 ~ 3090714 (-) False G152645
TU192573 other upstream 1412656 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 2424760 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 3205226 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 3614246 6490255 ~ 6496571 (-) True AMCG00005674

Expression Profile