RNA id: AMCG00005495


Basic Information

Item Value
RNA id AMCG00005495
length 1717
RNA type mRNA
GC content 0.46
exon number 6
gene id AMCG00005495
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2857277 ~ 2863981 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGTAGCCTAGTTTGGGTCTGCAGCCAGTAAAGTGCAGAGGACATAAGAGGGCGGAAGACTGAATAACCATCCCAAACGCTGGAGCTGGCATTTGGAGGGGGGCCCTGCAGCTTGGCATGCCACTGTAGTTAATAAAAAGCAGTCCAAAGGACAGCTGGGTAGACCTCATCCGTTCATTGTCTCTCAAACTGACAAGTTTTGCTTTCTGAAGCTGAGCAGAGAATATAGCCTTACAGCCCTGCCCGTCTgtgtgcctgtgcctgtgcctgGCAGTTTGGATCAGCGCTCCCTGGAAAATGCAAGTGTGGGATGTCCCGCAGCAGCGCAAGAGAGGATGGTACCTGTCTCTCATGGCTCCAAACACCAAGGGACCAAAATGTTCCTGGCTGGACCCATCGAGGCTCTACTGCAACCACCAGGCTTTGGCAGACTGTGTAAGAGACCTCCTCCATCCATTCTGCAATGATTCAATTGACCTGGTGGCTGGCATTGACGCCATGGGATTTATTCTAGGTTCTGCAGTGGCCACCAGTCTGGGGAAAGGCTTCCTGACCATCCGTAAAGCAGGTCACCTGTGTGTGGAGACCCAAACCCAGGCCTACAGTGACTATTCCGGCCGGGAGAAGCTGATGGAAGTACGAGTTGATGTGTTGAAGCCAGGGCTGCGTGTGTTGTTGGTGGACCAGTGGATTGAGACTGGGGGCACCATGAGGGCAGCAATTAAAATGGTGGAGGAACAGGGAGCTACCGTGGCAGGGGTGGCTGCGGTTGCCATTGAGAATACTGAGGGCGGGAAGTGGATCAAGAAGCAATACAAGTACTCCCAGTGTGTTCCCGAGCAGCTGCAGTCTCAGATTGATCAGCACTACCTGCAGTCCTTCGAGGCGTTCGAAAACCCGATCATCTgaaccccaacacacacacacacacacacacacacacacacatgctgcaCTGGGATATCTGTAGCCATTCAGTTGTAGGGTAGTTATTTGGGGCTTTGGGCTGCTGAAAGTTATGCCCTGGTGTCTTTGAGACAATATTTAGtggatcatttattttaaatcacacagtTGTATCAAACCCATAATTCGTAAAGGAATGGCTTCAGAGAGGCTACTGCCACTGTAAAGACACAAGGGGGTGCTCTTTTACCCTGGTTGTCCTCCAATACAACCCTTTAGGAACGGGGTTGGACCCTGGTACAGGACAGCCTCAATCCAGCTGCTTTTATAGGTCAGCTTAAAATAACCAATTTGCAACAAACGTGGAAATTtgcaattcagatttttttggtCAATTCAGTCCGATATCAAACTTCAGAGTAGATTTCCTTGACTTGAATAAGTGACTGTGCTAGTTTTAATAAACCATCAGGCAGCATGTGTTCTTAGTATTTAGAAAACAGGTAAGATATACAACTAGGATAATTAATTATTCTATTGCCAAATTAATTGTGCCACAAGAAACCCTGTTTTGAACTGATAAAGGCGATCAGAGTATCTTAAGAGAACAGCACCCCCCAGTGGATTGACAGACGGTGATACAAATGCAACAACTTGTAACCTTTCACTAATGAAGTTATTGATTTCTTCCAGTTACAAGCAGACTATAACCAGAAATAGTGCCTTCTTAATACTCAAGCACAGCCAGCAAGATCATAACTTtaatatgcattcaattatctttagctttcttttttttttttttttttt

Function

GO:

id name namespace
GO:0009116 nucleoside metabolic process biological_process
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192001 lncRNA downstream 412180 2415072 ~ 2445097 (-) False G152473
TU192000 lncRNA downstream 412180 2442111 ~ 2445097 (-) True G152473
TU191989 lncRNA downstream 449892 2406525 ~ 2407385 (-) False AMCG00005517
TU191974 lncRNA downstream 538605 2294833 ~ 2318672 (-) True G152452
TU191973 lncRNA downstream 556525 2294833 ~ 2300752 (-) False G152452
TU192221 lncRNA upstream 207879 3071860 ~ 3090714 (-) True G152645
TU192229 lncRNA upstream 296076 3160057 ~ 3160364 (-) True G152652
TU192240 lncRNA upstream 319840 3183821 ~ 3184685 (-) True G152661
TU192244 lncRNA upstream 337204 3201185 ~ 3201687 (-) True G152665
TU192325 lncRNA upstream 442705 3306686 ~ 3308431 (-) True G152736
AMCG00005496 mRNA downstream 36055 2811226 ~ 2821222 (-) True AMCG00005496
AMCG00005477 mRNA downstream 78845 2766546 ~ 2778432 (-) True AMCG00005477
AMCG00005478 mRNA downstream 163173 2683637 ~ 2694104 (-) True AMCG00005478
AMCG00005505 mRNA downstream 205730 2650912 ~ 2651547 (-) True AMCG00005505
AMCG00005485 mRNA downstream 271984 2584850 ~ 2585293 (-) True AMCG00005485
AMCG00005491 mRNA upstream 8525 2872506 ~ 2890448 (-) True AMCG00005491
AMCG00005479 mRNA upstream 128436 2992417 ~ 3005846 (-) True AMCG00005479
AMCG00005480 mRNA upstream 287063 3151044 ~ 3151919 (-) True AMCG00005480
AMCG00005501 mRNA upstream 485976 3349957 ~ 3365350 (-) True AMCG00005501
AMCG00005497 mRNA upstream 702856 3566837 ~ 3568504 (-) True AMCG00005497
TU191946 other downstream 527593 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 1136075 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 1241780 1612773 ~ 1615497 (-) False G152271
TU191743 other downstream 1349649 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 1485540 1371383 ~ 1371737 (-) False AMCG00005419
TU192197 other upstream 11305 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 207879 3071860 ~ 3090714 (-) False G152645
TU192573 other upstream 1424684 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 2436788 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 3217254 6081235 ~ 6082866 (-) True G153342

Expression Profile