RNA id: AMCG00005499


Basic Information

Item Value
RNA id AMCG00005499
length 4461
RNA type mRNA
GC content 0.50
exon number 25
gene id AMCG00005499
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3284870 ~ 3295314 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCTGCCCGTGGAAAGCGTTTCAGAAACTCGGCAACTTCAAAAACGCATCCTATGTCGTGGActtgaacaacaacaaagcggagaaaaagaaaaacgagtACAATAATGTCAGAGAGGTTATCAGAAAGATTCAAGATGAGAAAATGCCTGAAATTATGCCGAAGACTCAACCAAAGAAGCCCCCCCAGGAACCTGTGCAGAAGCCCGTTCACTCCCGATGCCCCTTCTCTCTCAAAGTTAAAAATGTGGAGGACGGCTCCAGCCTGCGGGACACTCTGCATCAACGGGCCGCCAAGGGCGCCATCATGAACCCCAAATCACTGACCCGCGGCCCGAGGGACCAGCCCGCCGCCCCTGAAGAAGTTCTTGTGCAGGCCATCGAGTTCATCAACCAGTTTTACCAGTCTTTCAAACAGCCGAAGACAGACGAGCACCTGGCCCGGGTGGAGGCGGTGGCCCTGGAGATTGAGAAGACTGGGACCTACCAGCTGACGTCGGAGGAGCTCGTGTTTGCAGCGAAGCAGGCGTGGCGCAACGCCCCCAGGTGTATCGGCAGAATCCAGTGGTCAAATCTGCAGGTGTTTGACGCTCGTAAGTGCTCCACTGCCAAGGAGATGTTTGAGTTCCTGTGCAATCACCTCAAGTATGCCACCAACGGGGGAAACCTGAGgtCAGCGATCACAATCTTCCCCCAGAGGACCGATGGGAAGCATGACTTCCGCGTGTGGAACGGCCAACTGGTGAAGTATGCCGGATACCAGATGCCCGACGGTACCATCCAGGGAGACCCCTCCAGTGTGCAGTTCACAGAGCTCTGTATCCAGCTGGGATGGAAGCCCAGATACGGCCGTTTCGATGTGCTGCCCCTGATCCTCCAGGCCAATGGAGAGGACCCTGAAGTCTTTGAGATCCCTCCTGAGCTCATTCTGGAAGTCCCAATGGAGCACCCCCAGTATGAGTGGTTCAAAGAGCTAGACCTCAAATGGTATGCCTTGCCAGCTGTCTCAGGCATGCTTCTTGAAGTGGGAGGCATAGAGTTCACCGCATGCCCCTTCAATGGTTGGTACATGGGCACAGAGATTGGCGTGAGGGACTTCTGCGATGCTCAGCGCTACAACATCCTGgagGATGTGGGGAGGAGGATGGGTCTGGAGACACAAAAGCTCTCCTCCCTGTGGAAGGACCAGGCGCTGGTGGCCATCAACATCGCTGTCATCCACAGCTTCCAGAAACGCAACGTCACCATCATGGACCACCACTCGGCTGCTGAGTCCTTCATGAAGCACATGCACAATGAGTTCCGGCTGCGGGGGGGCTGCCCTGCCGATTGGGTGTGGCTGGTGCCGCCCATGTCCGGCAGCCTCACCCCTGTCTTCCACCAGGAGATGGTCAGCTACATCCTCACCCCCTTCTACTATTACCAGCCAGATCCCTGGGTGACCCATGTCTGGCAGGACGAGCAGAAAAGACCAAAGAAGAGGCAGATCCGCTTCAAGGACCTGGCGAGAGCTGTGTTCTTTGCCTCCTCTCTGATACGTAAAGTCATGGCCAGCAGGGTGAAAGCCACTGTCCTGTATGCCACAGAGACGGGCAAATCGGAGACTTTTGCCAAGAAGCTCAACTCCATGCTGAACTGTGCCTTCAACTCCAGGGTGCTTTGCATGGAGGACTATGATTTCAGCGACCTGGAGAAGGAGACGTTCCTAGTGGTGGTCAGCAGCACGTTTGGCAATGGCGATTCCCCGGGGAATGGAGAGGTGATGGACGGGAAGCTGACGGAGCTGGGGGCGCACAGGGTGACCCTCACCGGGGAAGGAGATGAGCTGAGTGGCCAGGAAGAGGCCTTCACCACCTGGGCCAACGGCGCATTTAAGgaCGCTTGTGAGACATTTGAGATCCGTGGCCAGCTTAACATCCAGCTCCCCGGGGCCGGGCAGCTGAGCCACACGTGGGACCCTGAGAGGTACCGGCTGGCACAGGAGAGCCAGACTCTGGACAACATCACAGcgcTTTCTACTCTCCACTCCAAAGATGTGTTTgcaatgaaactgaaaaagagACAGAATCTGCAGAGTCCTCACTCGAGCCGCTCCACAATCCTGGTGGAACTGATCAGCACAGGGGACAAAGAGCTGCAGTATCTCCCCGGGGAGCACGTGGGGGTGTTCCCAGGAAACAGCGCCCAATTGGTCAGCAACATCATAAAACGAGTCCATGATGCACCGCCGTCCAATCAGAGCCTGCGTCTGGAGGTGCGTCCTGACGGCAGCCATGCGGGTGTGAAAAACTGGCAGACAGACAGCCGGGTCCCAGTATGCACTCTGTCTCAAGCCCTCGCTTACTTCCTGGATATCACCACACCACCCTCGCAGAGCCTCCTCCGCAAGCTGGCCCAGCTGGCCGGGGATCAGCAGCACCAGAATCGCCTGCTTGCTCTGGCCCAGAACTTGGAGGAGTACAAGACCTGGAAGACGTTCAACAGCCCCACCTTCCTGGAAGTACTGGAGGAGTTCTCCTCCCTGGAGCTCCCAGCCACCTTCCTCCTGAGCCAGCTGCCCCCCCTCAAGCCCAGATTCTACTCCGTCAGCTCGTCTCTGGACCGCCACCCTGGGGAGATCCACCTCACTGTGGCGGTTGTTAACTACCACACACAAGATGGTAAGGGTCCTCTACACCATGGCGTTTGCAGCACCTGGCTCAACACTATCAAGGAGGGAGACACGGTGCCCTGCTTCATCCGCAGAGCCAATGGCTTCCACCTCCCAGAGGACGCCAGCTCTCCCACTATCTTGGTGGGACCCGGCACGGGCATCGCTCCTTTCCGTGGATTCTGGCAACAGCGGCTCCATGCCCTGGAGACAAAAGgggtcAGAGGGGTACCGATGAGACTGGTGTTTGGTTGCCGGCAGTCGGACACAGATCACCTGTACCGGGATGAGATGCTGCAGATGCAGAGACGGGGCATCCTGAAGGAAGTCCTCACTGCCTACTCCCGCCAGCCTGGCCAGCCCAAGGTGTACGTGCAGGACATCCTGAGGGACAAGCTCTCAGAGGAGTTGTTTAGCGTCTTGCATCAGCGCCAGGGACACATTTACATCTGCGGGGATGTCAGGATGGCGCGGGACGTAGCGGAGACGCTCAAAGAGATCTTTGCTCACAAGCTGGGTATGAGTCTGGCTCAGGCTGGGGACTACCTCACGCAGCTCAAGACTGAGAAAAGGTATCATGAAGACATCTTTGGAGCAGTCTTCCACAAATGAAGAGATGTCAACCAAGGCAGGGTCAGTGCAGGGAGTGAAGACCCTCATTGGCTGGGATACTGTGAAAGACAATCAGTTTTTTGGTGGATTTATAGAAGTGAACCTATGCAGTATGCAAACCAAGTGCattcttttttaatgaaggaTTTTACAAATTGGTGTAAATTTTGAAACACTTTCTGTAAGGGACATATCAACTTTTAGGTTATCTTTCTGCATTCTTGATAGTCTACAAGAAAGATATATGTTCTATATTCCTTGATTTATGTctcaaaaatgtattcactcTAATTGAGTCGATATTTGCAGCAAAACAATCCTGCCTGGAAAGCACATCATTTTATATTAGGTGTAAACAAACAACATGTTCTTGGGAATCAAACAACAGCagaatatatttcagtatattgCGTGTATTTATAGAATGATACGCAAGCAATCAGTGGAATCTCTTCCCTATTCATCTGACGTTAAATGATTGTGTGATTTCTGGTGGGTTTTTAAGCCTGCAAGtaatgtatgtgtctgtggCACTCATTTGGCACTCTGTCAGGTGGAGGagataaagaaatgtataattagaAAATAGGCAACAAAAAAAGCTTGTAAACTGACTATATAATAACTATGGAAAAAATGCTTTGTATATACTAATGGTTAAAtgcatagtatttattttaataaagtctATTatcaatttgattatttttatcatcCCTAATGCAACTGTCATATTTACAGTGAGTGCTGTGGGTGAAACTGACAAGTATAAGTAAGGTTTTTTTCTTGAGGTAGTGCTTCTTGGGCTCTTGTTAATTACGTGTATAAGAAACCAGGGCTCTTCCAGGAGAAAATCATgtcaatctttatttattttattttaatgaagcatTTAGATGGTAATATATTCTGAAGTATAAACTGTAGAAATCAAATACAAGTGGAATGCTGTAGTGCAATGGAGATTCAGGGTAACAATATTAGGGAGACTATATTCTCTATGGCAAGAATGTCTATACAGCGAATAGGTTTACTGTTGTTTGCTAATGAAATCAAAGTATATTAAAACTCAATTGATTTTGACATTAATGGAGTGTGTGTGGTACTGCCACATTggtactgaatatatatttattttgtatatatgtgtggaATTACCCTTATTAATgcaattacattaaatcataatttccCTTA

Function

GO:

id name namespace
GO:0018119 peptidyl-cysteine S-nitrosylation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0006809 nitric oxide biosynthetic process biological_process
GO:0005506 iron ion binding molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0004517 nitric-oxide synthase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0050661 NADP binding molecular_function
GO:0010181 FMN binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K13241 NOS2; nitric-oxide synthase, inducible

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192236 lncRNA upstream 24441 3260210 ~ 3260429 (+) True G152657
TU192235 lncRNA upstream 84683 3199332 ~ 3200187 (+) True G152656
TU192233 lncRNA upstream 97882 3184755 ~ 3186988 (+) True G152655
TU192232 lncRNA upstream 99538 3183821 ~ 3185332 (+) False G152655
TU192366 lncRNA downstream 428599 3723913 ~ 3761827 (+) True G152764
TU192522 lncRNA downstream 963552 4258866 ~ 4260635 (+) True G152866
TU192568 lncRNA downstream 996716 4292030 ~ 4292882 (+) True G152906
TU192606 lncRNA downstream 1237007 4532321 ~ 4534824 (+) True G152943
TU192772 lncRNA downstream 1895213 5190527 ~ 5190796 (+) True G153080
AMCG00005498 mRNA upstream 14026 3266374 ~ 3270844 (+) True AMCG00005498
AMCG00005508 mRNA upstream 28764 3229689 ~ 3256106 (+) True AMCG00005508
AMCG00005507 mRNA upstream 82110 3201501 ~ 3202760 (+) True AMCG00005507
AMCG00005506 mRNA upstream 105190 3173579 ~ 3179680 (+) True AMCG00005506
AMCG00005509 mRNA upstream 112935 3151681 ~ 3171935 (+) True AMCG00005509
AMCG00005500 mRNA downstream 9575 3304889 ~ 3306844 (+) True AMCG00005500
AMCG00005522 mRNA downstream 338419 3633733 ~ 3637811 (+) True AMCG00005522
AMCG00005526 mRNA downstream 347575 3642889 ~ 3644121 (+) True AMCG00005526
AMCG00005523 mRNA downstream 353533 3648847 ~ 3652715 (+) True AMCG00005523
AMCG00005551 mRNA downstream 411339 3706653 ~ 3722896 (+) True AMCG00005551
TU192254 other upstream 14031 3266742 ~ 3270839 (+) False AMCG00005498
TU192255 other upstream 14031 3266742 ~ 3270839 (+) False AMCG00005498
TU192155 other upstream 435262 2845217 ~ 2849608 (+) True G152588
TU192049 other upstream 774194 2503910 ~ 2510676 (+) True AMCG00005481
TU192048 other upstream 774194 2503993 ~ 2510676 (+) False AMCG00005481
TU192563 other downstream 987746 4283060 ~ 4284963 (+) False AMCG00005538
TU192612 other downstream 1264899 4560213 ~ 4561484 (+) False AMCG00005546
TU192781 other downstream 1919509 5214823 ~ 5221915 (+) False AMCG00005583
TU193227 other downstream 3192404 6487718 ~ 6488620 (+) True AMCG00005667
TU193523 other downstream 3965363 7260677 ~ 7265971 (+) True G153675

Expression Profile