RNA id: AMCG00005517


Basic Information

Item Value
RNA id AMCG00005517
length 2079
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00005517
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2406525 ~ 2410247 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTTAGAGTCAAATGACGAGCCTGGTCGCAGCTCGACGGCTCTTGATACAACTACACTTCCTGGACTATTGACGTCACAGGTGACGAAGAGCCAATGAAACACCCGGATGCCAGAGTCACAGTAAACATGGCGGCGCTGGTGAGAAGCGTGAGTCTCCGAGTCCTGGCTGCGGAGTCAAGGACCTTTCTGGCGGGGCGAGAGAAAGCCCTTGTCGATGTCAAGCGATACGTGAGGGCGCTGAGACGCAACCCCGTCAAGGTGCTGTACCCGGGAAATGATACCGATCAGCTACTGAAATCAGCGGGCAAGCCCAGGGACCGGGGGCACCCACCCGCCACAGACAGCGGGAAAAACACCGGCCGGGGGGCGAAGAGAGAGAAACCGCAAAGCCAGGGCAGCTCCGTCCCCAGACACGGGGCTCACAGTCAAGCTGGCCTCCGAGCTGGAGAGCGACTCCCCCCGGCGGAGCATGTGCGGAGCAGCGCGGTGGCCGGCGCTGCAGACCCCGGGGACGAGCTGGACGGGCTGCGATACGAGAAGGCTTTCCCTGGAGACAAGAGACTGGCGAGGGTGGTGTGCGTGGCACGCTCCCGCACGTTTCGAGAGAAGCAGGGCAAGGTGCTGCTGGAGGGCCGGCGGCTGATCTGCGACGCGCTGGCGGCGGGCGCGCTGCCCCAGACGCTGTTTTTCAGCTCCGTGGACCAGCTGAGGACGTTGCCGCTGGACAAGCTGAGGCGCGCCTCCTTTGTCAAAGTCAAGTTCGAAGACATTAAGATCTGGTCTGACCTGGTGACCCCGCAGGGCGTGATCGCCATCTTCTCCCGTCCAGAGGTGGGCAAGCTGGTGTTCCCCCAGCAGCAGGAGCCGCTGCCCCTCTCTCTGATCTGCGACAACATCCGCGACCCGGGCAACGTGGGCACCATCCTGCGCTGCGCTGCTGCCGCCGGCTGTCAGAGAGTGCTGCTCACTCGGGGCTGTGTGGATGTCTGGGAGCCCAAAGTGCTGCGAGCCGCCATGGGCGCCCACTTCCGCGTGCCCATCGTTCCCAGCCTGCACTGGGAGGAGGTTCCCAACTACCTCTCCGAGACGACCACCGTCCACCTGGCCGACAACTGCAGCACCGCCCCTGAGGGCCCCAAAGAGGCAGAGAAGCCCCCCGCCCCGCCTCGCAAGGCAGGGGACTACGGCTGGGTGAGCAACCGGCCGAATCCCAGGAGGTCTCGCTATGAGGAGTACGCCATGGAATCTGATTCGGATTCAGACTCTGACTCTGACTCGGAAGAGGAGGACAGGGGTGCCAGGCTCACTCTCCCCGCAGTGGAGTCCCATCTGTACCACCAGGACTGGACCGGGGGCCACACTGCGCTCGTGATTGGTGGGGAGACCCATGGACTAAGCCTGGAGGCGCTGCTGTTGGCCGAGAAGACCGATGGGCGGAGGCTGTTGGTTCCCATGGTGGAGGGAGTGGACAGTCTGAACTCCGCTATGGCCGCCAGCATCCTGGTATTCGAGGCCAAGAGGCAACTGACCgagagaggcaggcaggcaggctggAAGCAAGGCTAAATCCACGGCCTAGCGACACTCTGACTGGACTGACACGGTGCTGTTCTTGACCTGGCTCCAGCCCAGTACGGACCTGGTGATTGAAGTTATTGCTGAATAAATAACACATGATTGAGAGTGATCGGTTCATTCGTTCATCACTGTAGCTTTAGAAAACCACACATCAACACAATACACCACAAAGAAAACATCCCTGCTCGTGAAAGCATGCTTGAATTGGAAGGGGTTTTGTTTAATCAGTTATTCATATGACTTCCGCTCTGGTTAGCCACCAACATATACACAGAATTCGCAATAGATCATTAAATCAGacgtttttatttgttaattgatCTTGCTTCCTCTGTTGTGGCGGTGGAGCGATGCGCTCAGTCTTGCTCACACTGTTGAGAAAAGCATGTGCGCTTCCAACAGAGGTAAGCAAGGTGTAGTCATTCGTAACTGCCCCTGCTCCCAGAGAAGACTGTGAAACTGCGCTCCCTTCCACCCGCACCACTGCAGCATCAGTCAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
K20095 RNMTL1; 16S rRNA (guanosine(1370)-2'-O)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191974 lncRNA downstream 88487 2294833 ~ 2318672 (-) True G152452
TU191973 lncRNA downstream 106407 2294833 ~ 2300752 (-) False G152452
TU191933 lncRNA downstream 231205 2167604 ~ 2175954 (-) True G152424
TU191837 lncRNA downstream 460359 1941023 ~ 1946800 (-) True G152344
TU191821 lncRNA downstream 654421 1745953 ~ 1752738 (-) True G152335
TU192001 lncRNA upstream 4825 2415072 ~ 2445097 (-) False G152473
TU192000 lncRNA upstream 31864 2442111 ~ 2445097 (-) True G152473
TU192221 lncRNA upstream 661613 3071860 ~ 3090714 (-) True G152645
TU192229 lncRNA upstream 749810 3160057 ~ 3160364 (-) True G152652
TU192240 lncRNA upstream 773574 3183821 ~ 3184685 (-) True G152661
AMCG00005519 mRNA downstream 74263 2331855 ~ 2332896 (-) True AMCG00005519
AMCG00005520 mRNA downstream 85516 2308678 ~ 2321643 (-) True AMCG00005520
AMCG00005521 mRNA downstream 106305 2284444 ~ 2300854 (-) True AMCG00005521
AMCG00005532 mRNA downstream 135836 2239623 ~ 2271323 (-) True AMCG00005532
AMCG00005533 mRNA downstream 184383 2217709 ~ 2222776 (-) True AMCG00005533
AMCG00005485 mRNA upstream 174603 2584850 ~ 2585293 (-) True AMCG00005485
AMCG00005505 mRNA upstream 240665 2650912 ~ 2651547 (-) True AMCG00005505
AMCG00005478 mRNA upstream 273390 2683637 ~ 2694104 (-) True AMCG00005478
AMCG00005477 mRNA upstream 356299 2766546 ~ 2778432 (-) True AMCG00005477
AMCG00005496 mRNA upstream 400979 2811226 ~ 2821222 (-) True AMCG00005496
TU191946 other downstream 77475 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 685957 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 791662 1612773 ~ 1615497 (-) False G152271
TU191743 other downstream 899531 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 1035422 1371383 ~ 1371737 (-) False AMCG00005419
TU192197 other upstream 465039 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 661613 3071860 ~ 3090714 (-) False G152645
TU192573 other upstream 1878418 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 2890522 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 3670988 6081235 ~ 6082866 (-) True G153342

Expression Profile