RNA id: AMCG00005519


Basic Information

Item Value
RNA id AMCG00005519
length 384
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00005519
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2331855 ~ 2332896 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCATCTCCCAGCTTATGGTCTTTATGATAAGCTTCGTTAGCACCGTGTTTTGTGGCCATCTGGGCAAGACCGAGCTATCTGCTGTTGCGCTGGCCACTGCAGTTATAAATGTTGCAGGGATCTCCATTGGATCAGGCTTAGCGTCTACCTGTGACACACTGATATCTCAGacCTTCGGCGGCTGTAACCTGAAGCGTGTGGGGGTCATCCTGCAGAGAGGGGTGCTGATCTTGCTGCTGGCCTGCTTCCCTTGCTGGGCTCTTCTCATCAACACCGAGCCCATCCTGCTGGCTGTGAAGCAGAGCCCCGAGGTGGCCAGGTCAGCTCAGGCCAGGGCTGGGGCTCGAGGGACCCTCTCTGTGCACACCATCTATATCAGTTAG

Function

GO:

id name namespace
GO:0006855 drug transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015297 antiporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191974 lncRNA downstream 13183 2294833 ~ 2318672 (-) True G152452
TU191973 lncRNA downstream 31103 2294833 ~ 2300752 (-) False G152452
TU191933 lncRNA downstream 155901 2167604 ~ 2175954 (-) True G152424
TU191837 lncRNA downstream 385055 1941023 ~ 1946800 (-) True G152344
TU191821 lncRNA downstream 579117 1745953 ~ 1752738 (-) True G152335
TU191989 lncRNA upstream 73629 2406525 ~ 2407385 (-) False AMCG00005517
TU192001 lncRNA upstream 82176 2415072 ~ 2445097 (-) False G152473
TU192000 lncRNA upstream 109215 2442111 ~ 2445097 (-) True G152473
TU192221 lncRNA upstream 738964 3071860 ~ 3090714 (-) True G152645
TU192229 lncRNA upstream 827161 3160057 ~ 3160364 (-) True G152652
AMCG00005520 mRNA downstream 10212 2308678 ~ 2321643 (-) True AMCG00005520
AMCG00005521 mRNA downstream 31001 2284444 ~ 2300854 (-) True AMCG00005521
AMCG00005532 mRNA downstream 60532 2239623 ~ 2271323 (-) True AMCG00005532
AMCG00005533 mRNA downstream 109079 2217709 ~ 2222776 (-) True AMCG00005533
AMCG00005489 mRNA downstream 258559 2070365 ~ 2073296 (-) True AMCG00005489
AMCG00005517 mRNA upstream 74263 2407159 ~ 2410247 (-) True AMCG00005517
AMCG00005485 mRNA upstream 251954 2584850 ~ 2585293 (-) True AMCG00005485
AMCG00005505 mRNA upstream 318016 2650912 ~ 2651547 (-) True AMCG00005505
AMCG00005478 mRNA upstream 350741 2683637 ~ 2694104 (-) True AMCG00005478
AMCG00005477 mRNA upstream 433650 2766546 ~ 2778432 (-) True AMCG00005477
TU191946 other downstream 2171 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 610653 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 716358 1612773 ~ 1615497 (-) False G152271
TU191743 other downstream 824227 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 960118 1371383 ~ 1371737 (-) False AMCG00005419
TU192197 other upstream 542390 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 738964 3071860 ~ 3090714 (-) False G152645
TU192573 other upstream 1955769 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 2967873 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 3748339 6081235 ~ 6082866 (-) True G153342

Expression Profile