RNA id: AMCG00005526


Basic Information

Item Value
RNA id AMCG00005526
length 1233
RNA type mRNA
GC content 0.53
exon number 1
gene id AMCG00005526
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3642889 ~ 3644121 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAACTCCAAAAAGGACTGAACAAACCTCCAAGGCTAAAGTGACCTTTCATCCAACCACTGTCAAACCCACCGAAACGACTCGAGAAAACGTAACGTCGGCTGCAACGCCAGCCCAAAAAGGCATTGAAGACCACCCATCGTTGCCCATCTCAAACAGCTCGTCACCTCCCACGGAACAAGCAAGCACCGCCTACACTACCACTTCTCTGACATACACAACTAAAGATCACACAAATATTACAGCTGTGCTATCTACCACAAAATCAGCACAAACTACTGAAAGAACTACTATTACTCCCGCTCCTCCGACAACCACGGCTCCAAAGCAACGGACCACCAAGCAAGAGACTTCAGCAAGCACAACTACTGCTCCTTCCACAACCACAACTGCCAAGGTGTCCACCCTGGGAACCAGTACGACTGCCAAGGAAACCATCGAGACAACCCACACCACGCCTGCAAACACAGAGAAGAGCCAAGGCGCAGGGAAAATTGTAACCATCATCATCAGCGGGGCTCTAATCTCGATGCTGATTGTAATACTCTGTATTTTGCTGCGCAAGAGGCTACAGCAGAACAGGAGGGTGGAAAACCCAGAATGGGCCGGACCCTCCCCCTTCCTGGATGGCAAATACACGGACAACCTCTCCACTGTGGATGAGGAGGAAAAGAAGCCGAGCCTCAGGTCCTCTAAGGGCATCTCGCTGGGCGGCTTTCTGCCCCAGCGCTTCTCCAaacgtctctctctcctccggGAGACGGACAAGGAGCTCATGATGGGAGACTTCCAGCAGGGAAGCACGTTCAACACGGGTGAGCCACCCAAATCTCAGAAGGGTGGTGCAGTAGAGACAGATAACAAGCAGAACAGCCCAGCCAGCTCTAATGGCCACAGCGGAGCTTCCAGCAAGGAAAGCCCACAGGATGGGATTATGACTAAGGCTACGGGAGTCAACAGCAGCTTGGGGGATCAAACCTCTGCTTCTCCAGAGCACGCTACATTACCTACTGCAGAGAACCAGGCAGCTGCGCCGTTAGTAGATATTGATCTTGGAGCAAACCCTACTGACAATGAAGCCTTGCCCCCTCCATCCCAACTAGATGAGCAGACCATTCCTGCGGCAGTCCCAGATACCCAGCCTGATTCCATCCCTGaccttccccctcccccatcaATGGATAACCAGTCtattcctcctccaccttcCCCTCCACCTCTCACCCAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192236 lncRNA upstream 382460 3260210 ~ 3260429 (+) True G152657
TU192235 lncRNA upstream 442702 3199332 ~ 3200187 (+) True G152656
TU192233 lncRNA upstream 455901 3184755 ~ 3186988 (+) True G152655
TU192232 lncRNA upstream 457557 3183821 ~ 3185332 (+) False G152655
TU192366 lncRNA downstream 79792 3723913 ~ 3761827 (+) True G152764
TU192522 lncRNA downstream 614745 4258866 ~ 4260635 (+) True G152866
TU192568 lncRNA downstream 647909 4292030 ~ 4292882 (+) True G152906
TU192606 lncRNA downstream 888200 4532321 ~ 4534824 (+) True G152943
TU192772 lncRNA downstream 1546406 5190527 ~ 5190796 (+) True G153080
AMCG00005522 mRNA upstream 5078 3633733 ~ 3637811 (+) True AMCG00005522
AMCG00005500 mRNA upstream 336045 3304889 ~ 3306844 (+) True AMCG00005500
AMCG00005499 mRNA upstream 347575 3284870 ~ 3295314 (+) True AMCG00005499
AMCG00005498 mRNA upstream 372045 3266374 ~ 3270844 (+) True AMCG00005498
AMCG00005508 mRNA upstream 386783 3229689 ~ 3256106 (+) True AMCG00005508
AMCG00005523 mRNA downstream 4726 3648847 ~ 3652715 (+) True AMCG00005523
AMCG00005551 mRNA downstream 62532 3706653 ~ 3722896 (+) True AMCG00005551
AMCG00005550 mRNA downstream 95287 3739408 ~ 3740831 (+) True AMCG00005550
AMCG00005558 mRNA downstream 121893 3766014 ~ 3788578 (+) True AMCG00005558
AMCG00005559 mRNA downstream 155146 3799267 ~ 3807613 (+) True AMCG00005559
TU192254 other upstream 372050 3266742 ~ 3270839 (+) False AMCG00005498
TU192255 other upstream 372050 3266742 ~ 3270839 (+) False AMCG00005498
TU192155 other upstream 793281 2845217 ~ 2849608 (+) True G152588
TU192049 other upstream 1132213 2503910 ~ 2510676 (+) True AMCG00005481
TU192563 other downstream 638939 4283060 ~ 4284963 (+) False AMCG00005538
TU192612 other downstream 916092 4560213 ~ 4561484 (+) False AMCG00005546
TU192781 other downstream 1570702 5214823 ~ 5221915 (+) False AMCG00005583
TU193227 other downstream 2843597 6487718 ~ 6488620 (+) True AMCG00005667
TU193523 other downstream 3616556 7260677 ~ 7265971 (+) True G153675

Expression Profile