RNA id: TU191946


Basic Information

Item Value
RNA id TU191946
length 361
RNA type TUCP
GC content 0.50
exon number 5
gene id AMCG00005532
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2197354 ~ 2329684 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTATAATCGGGGGGACAAAGGATGTCATCGCTTACGTCTTCACTAACGACTCGGAGATTCGAGAGAGGGTTTCACAGGTGATGGTTCTGTTCGCTCCGTACCACCTCTTCGAAGCAACAGTGTGTGTGACCGCGGGAGTGGTGAGGGGGACTGGCAAGCAGAAGATCGGAGCAATTGGTTTTCTGGTGGGATACTATTTTATCGGCCTTCCCATTGGAATTTCCCTAATGTTTGCTGCGCACATGGGAATCATTGgGCTGTGGACAGGTATACTAATCTGTGTGGCGCTCCAGTCCTGCTTCTTAATCGTCTTACTCCTTAAAATGAACTGGAACAAGGCCACAGCGGAGTGGCTGTTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191933 lncRNA downstream 21400 2167604 ~ 2175954 (-) True G152424
TU191837 lncRNA downstream 250554 1941023 ~ 1946800 (-) True G152344
TU191821 lncRNA downstream 444616 1745953 ~ 1752738 (-) True G152335
TU191799 lncRNA downstream 503799 1692749 ~ 1693555 (-) True G152320
TU191737 lncRNA downstream 581857 1567118 ~ 1615497 (-) True G152271
TU191989 lncRNA upstream 76841 2406525 ~ 2407385 (-) False AMCG00005517
TU192001 lncRNA upstream 85388 2415072 ~ 2445097 (-) False G152473
TU192000 lncRNA upstream 112427 2442111 ~ 2445097 (-) True G152473
TU192221 lncRNA upstream 742176 3071860 ~ 3090714 (-) True G152645
TU192229 lncRNA upstream 830373 3160057 ~ 3160364 (-) True G152652
AMCG00005489 mRNA downstream 124058 2070365 ~ 2073296 (-) True AMCG00005489
AMCG00005488 mRNA downstream 138101 2057982 ~ 2059253 (-) True AMCG00005488
AMCG00005431 mRNA downstream 241294 1949221 ~ 1956060 (-) True AMCG00005431
AMCG00005421 mRNA downstream 340149 1839567 ~ 1857205 (-) True AMCG00005421
AMCG00005420 mRNA downstream 389274 1802917 ~ 1808080 (-) True AMCG00005420
AMCG00005519 mRNA upstream 2171 2331855 ~ 2332896 (-) True AMCG00005519
AMCG00005517 mRNA upstream 77475 2407159 ~ 2410247 (-) True AMCG00005517
AMCG00005485 mRNA upstream 255166 2584850 ~ 2585293 (-) True AMCG00005485
AMCG00005505 mRNA upstream 321228 2650912 ~ 2651547 (-) True AMCG00005505
AMCG00005478 mRNA upstream 353953 2683637 ~ 2694104 (-) True AMCG00005478
TU191793 other downstream 476152 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 581857 1612773 ~ 1615497 (-) False G152271
TU191743 other downstream 689726 1505940 ~ 1507628 (-) True G152277
TU191607 other downstream 825617 1371383 ~ 1371737 (-) False AMCG00005419
TU191554 other downstream 938428 1219327 ~ 1258926 (-) False G152133
TU192197 other upstream 545602 2875286 ~ 2876009 (-) False AMCG00005491
TU192222 other upstream 742176 3071860 ~ 3090714 (-) False G152645
TU192573 other upstream 1958981 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 2971085 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 3751551 6081235 ~ 6082866 (-) True G153342

Expression Profile