RNA id: AMCG00005543


Basic Information

Item Value
RNA id AMCG00005543
length 453
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00005543
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4749079 ~ 4750970 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCAACGCACTGTGGGCAGTTAAGTCAGAGGCATGGTGCTGCCACAGCCTTGTAATCCCAGGAGAGCggcaagaggagagagaaaccgCATGGATAGAAATAAAGTCTTCCATCCGGACGGACACCCTCACTCAGAGCCCTGCTGTGAAGTGCAAGTGCCTGCACCGCTCAGACAACTCGGCCTATCTCTGCCTGGAGATAAGAGCGTCGCTGCCAAACGCTGATCAAAGGCAACCTCGCGGAGGCTTCGATACGAGACGAGTCTTCCACTCCAACCCCAAGTACACTCTGAACCCGCCGCAGCTGCAGAGGGAAGGAAGCATCGAGACGCTCAGCAACAGCTCCGGCTCCACCAGCGGAAGCATAACTCGCAATTTTGAGGGTTACCGTTCGCCGCTCCCCACCAATGAGAACCAGCCCCTCAGCCTGTTCCCCACGGGATTCCCTTAA

Function

GO: NA

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192605 lncRNA downstream 217347 4531440 ~ 4531732 (-) True G152942
TU192577 lncRNA downstream 448681 4292030 ~ 4300398 (-) True G152915
TU192551 lncRNA downstream 488767 4257221 ~ 4260312 (-) True G152894
TU192507 lncRNA downstream 755558 3989919 ~ 3993521 (-) True G152853
TU192455 lncRNA downstream 879870 3859796 ~ 3869209 (-) False AMCG00005560
TU192843 lncRNA upstream 600383 5351353 ~ 5352345 (-) True G153141
TU192845 lncRNA upstream 602383 5353353 ~ 5355697 (-) True G153143
TU192894 lncRNA upstream 736339 5487309 ~ 5489599 (-) True G153178
TU192961 lncRNA upstream 897388 5648358 ~ 5648709 (-) True G153236
TU192977 lncRNA upstream 990522 5741492 ~ 5748572 (-) True G153248
AMCG00005540 mRNA downstream 18627 4718184 ~ 4730452 (-) True AMCG00005540
AMCG00005541 mRNA downstream 52964 4678650 ~ 4696115 (-) True AMCG00005541
AMCG00005555 mRNA downstream 152597 4560933 ~ 4596482 (-) True AMCG00005555
AMCG00005548 mRNA downstream 197420 4547077 ~ 4551659 (-) True AMCG00005548
AMCG00005549 mRNA downstream 204879 4543326 ~ 4544200 (-) True AMCG00005549
AMCG00005542 mRNA upstream 11597 4762567 ~ 4763161 (-) True AMCG00005542
AMCG00005564 mRNA upstream 127045 4878015 ~ 4921691 (-) True AMCG00005564
AMCG00005566 mRNA upstream 181954 4932924 ~ 4935507 (-) True AMCG00005566
AMCG00005563 mRNA upstream 187181 4938151 ~ 4943348 (-) True AMCG00005563
AMCG00005565 mRNA upstream 204076 4955046 ~ 4966536 (-) True AMCG00005565
TU192573 other downstream 459187 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 1658365 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 1873070 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 2419395 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 3027877 1708683 ~ 1721202 (-) True AMCG00005461
TU192831 other upstream 549799 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 1330265 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 1739285 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 3034584 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 3248366 7999336 ~ 8001340 (-) False AMCG00005704

Expression Profile