RNA id: AMCG00005548


Basic Information

Item Value
RNA id AMCG00005548
length 675
RNA type mRNA
GC content 0.63
exon number 6
gene id AMCG00005548
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4547077 ~ 4551659 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGTGGGTGTCTGTGGTGGAGGTGCTGGGCCGGGAAGTGTACACCTCCAACAACCAGCTGGGGGGAGTACAGATCATGCACAACAACGGTGTGACGCACAGCACGGTCTGTGACGATTTCGAGGGTGTCTACACGCTGCTGCAGTGGCTGTCCTACATGCCAAAGTGCAACTCCAGTCCCGTGCCCATCCTGAACGCCAAGGACCCCATCGACCGGCCGGTGGAGTTTGTCCCCACCAAGGCGCCCTACGACCCGCGCTGGATGCTGGCCGGCCGCCCTAGCCAGAGTCCTAAGGGCCCGTGGATCAGCGGCTTCTTCGACCACGGCTCCTTCCTAGAGATCATGCAGCCCTGGGCCCAGAGTGTGGTGGTGGGCAGAGCCAGGCTGGGTGGGATACCCACTGGAGTGGTGGCTGTGGAAACCAGGTCTGTGGAGCTGTCGGTGCCAGCGGACCCAGCCAACCTGGACTCTGAGGCCAAGATCATCCAACAGGCCGGCCAGGTGTGGTTCCCCGACTCGGCCTTCAAGACGGCCCAAGCCATCAAAGACCTGAACCGCGAGGGGCTGCCGCTCATGGTCTTCGCCAACTGGAGGGGCTTCTCTGGGGGCATGAAAGGTCAGCATCCCGAGCCGCCCACATGTTCCCTGCCTGCATGCGCTTCCTTCCTCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192605 lncRNA downstream 15345 4531440 ~ 4531732 (-) True G152942
TU192577 lncRNA downstream 246679 4292030 ~ 4300398 (-) True G152915
TU192551 lncRNA downstream 286765 4257221 ~ 4260312 (-) True G152894
TU192507 lncRNA downstream 553556 3989919 ~ 3993521 (-) True G152853
TU192455 lncRNA downstream 677868 3859796 ~ 3869209 (-) False AMCG00005560
TU192843 lncRNA upstream 799694 5351353 ~ 5352345 (-) True G153141
TU192845 lncRNA upstream 801694 5353353 ~ 5355697 (-) True G153143
TU192894 lncRNA upstream 935650 5487309 ~ 5489599 (-) True G153178
TU192961 lncRNA upstream 1096699 5648358 ~ 5648709 (-) True G153236
TU192977 lncRNA upstream 1189833 5741492 ~ 5748572 (-) True G153248
AMCG00005549 mRNA downstream 2877 4543326 ~ 4544200 (-) True AMCG00005549
AMCG00005547 mRNA downstream 11032 4534140 ~ 4536045 (-) True AMCG00005547
AMCG00005539 mRNA downstream 254206 4284717 ~ 4292871 (-) True AMCG00005539
AMCG00005568 mRNA downstream 527331 4004263 ~ 4019746 (-) True AMCG00005568
AMCG00005560 mRNA downstream 678621 3850136 ~ 3868456 (-) True AMCG00005560
AMCG00005555 mRNA upstream 9274 4560933 ~ 4596482 (-) True AMCG00005555
AMCG00005541 mRNA upstream 126991 4678650 ~ 4696115 (-) True AMCG00005541
AMCG00005540 mRNA upstream 166525 4718184 ~ 4730452 (-) True AMCG00005540
AMCG00005543 mRNA upstream 197420 4749079 ~ 4750970 (-) True AMCG00005543
AMCG00005542 mRNA upstream 210908 4762567 ~ 4763161 (-) True AMCG00005542
TU192573 other downstream 257185 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 1456363 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 1671068 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 2217393 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 2825875 1708683 ~ 1721202 (-) True AMCG00005461
TU192831 other upstream 749110 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 1529576 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 1938596 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 3233895 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 3447677 7999336 ~ 8001340 (-) False AMCG00005704

Expression Profile