RNA id: AMCG00005551


Basic Information

Item Value
RNA id AMCG00005551
length 2640
RNA type mRNA
GC content 0.52
exon number 9
gene id AMCG00005551
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3706653 ~ 3722896 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGCCATTGCCAGTCAGAGTCCCAGCGTCGAGCAGCCGAGCAGCGCCGCGCATTGAGCCGATCACCCGGTCAAAACGTCTCACTTTCCCGCCTGCCAGAGCCCCACCAGCCAGCCCGTGTCGCGTTGATCTCGCCTGCAGGGTTGAAAGAGTGTCTCCCGCGTTTCGGGGGCTGAGATCCGCTCTTTTACCGTCTTATCCGGCTGCACGTCGTCTGCGGGGGATAAAGCAGGAAGTCCCATTCTTCCACTCGCGTGTTTTATTTGTCTCTACATATACAGATTTGTGTTCGTCCGTTTATTTGATAGTCTGCCCTTTTTTTTAGAGCTCCGTTCCCTTTTAGATGGCAAGCTTTCCAGATTTTGTAAACGAAAATGAATTAGCCAAGGCTAGACCTATCGGGGAACTCTTAGCTCCAGTTGCTCCTTTCGACCAGAAGTCCGGGCGGGAAACCTGGACTGTGGCTTTTGCTCCTGATGGTTCATACTTCGCTTGGTCTCAAGGGCATCGCATAGTGAAGCTCGTACCCTGGTCCAGATGCCTGAATGACTTCTCTGTGGGCACCGCTGACTTCTCCAATGTGGCGGGACCGCGGCGCCTCTCGCGGCAGAACAGTGACGGGCAGCTGCAGAGGAGCGAGCCCCGGGAGCACACCATCGACTGCGGGGACATCGTGTGGGGGCTGGCGTTCGGCTCGTCGGTGCCCGAGAAGCAGAGCCGCTGCGTCAACATCGAGTGGCACCGCTTCAAGTTTGGCCAGGACCAGCTCCTGTTGGCCACCGGGCTGAACAACGGGCGCATCAAGATCTGGGATGTCTACACCGGCAAACTGTTGCTGAACTTAATGGACCACACCGAAGTTGTCCGTGACCTGACCTTTGCTCCCGACGGAAGCCTTATGTTAGTGTCGGCCTCCAGAGACAAAACCCTGCGCGTGTGGGACCTGAAAGATGATGGAAACATGGTGAAAGTCCTGCGCGGCCATCAGAACTGGGTGTACTGCTGCGCGTTCTCCCCCGACTCCGCGGTGCTGTGCTCGGTGGGCGCCGGTAAAGCGGTCTTCCTGTGGGATATGGATAAGTACACCCTGATTCGAAAGCTGGAGGGTCATCATAACGACGTGGTGTCCTGCGAGTTCTCGCCCGATGGGGCTTTACTGGCCACCGCCTCCTATGACACTCGAGTCATAGTGTGGGACCCGCATGTGGGGAGTGTGCTCCTTGAGCTGggACACCTGTTTCCCCCTCCCTCGCCGATATTTGCAGGCGGGGCGAATGACCGCTGGGTGCGATCGGTGGCCTTCTGTCACGACGGGCTGCACATCGCCACCGTCGCTGACGACAGGCTGTTGCGGTTCTGGAACATCGATGAGAAATCCCCCCAGGCTGTGGCCCCTCTGACGAATGGGATCTGCTGTGCCTTCTCCACCGACGGCAGTGTTTTAGCTGCTGGATCCCGTGACGGAAGCGTGCACTTCTGGGCGTCTCCGCGCAGCATCTCCAGCCTTCAGCACTTGTGCCGCATGGCGCTGCGCCGCGTGCTACCCACGGACAAGGTGCAGACCCTGCCCATCCCGCCAAGAATGGTGGAATACCTCTCTTACAAGATTTAAACACCAGCATGATTGCACGCTGTTAACCAATGatttttctacaaaaaaaaaaagagaaaaacttgATTTgatatcaagaaaaaaaaaatgctctaagtcacatctttttgtttttcatatttattcttatttaattgtaaCACCTGGGGCTCGGCCTGAAAATGAGCAGATTTTAAGGTGGCACATTTGTAATTGTGATGTTCGGTGATCTAGCTGGATGGCCAATAGCTTTTCAACAGCCTTACTGCGTCAGTGCAGGTGTGTCCGTTATGACCCTGTTGCTGTTCACTTCTGTGCCGGCCGTTATAGTTCTGGAACGGCCTTGACTTCCTCTCTGCTTTGTGCAGAAGTTGTGATGTTcgacgaaaaaaaaaaagttctcgCCATAAAAGGCACCTCTTtttaggggggtgggggagaggagGTTTGGGTTTGCAATCATTAATCTCAGCTTCTGGTGGATGTTAAGACTTGAATTTAAAGGTCTCTAGCTTTCTTAAACTGTCCTTAAGTATACGCACCTGCCCTGAGTCATGGCCGTCGGTGGCTGGTGTGCATTACGAGTGTGGGGTGTGTGCGCAGGGGtggtgtggggtggggtggctCTGCTTGGTGCCCATTTGAAGTCCTGGGGCAGCAGTGGGGGGTGATGACTGTACAGCTGTAGGAGTGTTGTCTGTCTTTCAGGGACAGGGCGGTGCCCGAGTAATGTGCCTCTGAGATTTACGTCTAGGTCTTAACAGGTGCTGCCCCAAGTCTTATACATGCATCTAAAATACTACCTGTGGTGTTTTAAAGGATGctttatttctgtgaaaaacaGTATCTCATGGGCTGACCATTACAGTatcctgtgtgtatgtgtatacatatatataaatacacttcCCATATTGGCTGTATAGAAATCTGTCAAGATGATACTGTGTACATGtaaaagtgtatatataaagcCACTTAAggctttgtatgttttatacatgtatatattttgccttaagtttttttttttttattttacttttctg

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10341 WSB1; WD repeat and SOCS box-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192236 lncRNA upstream 446224 3260210 ~ 3260429 (+) True G152657
TU192235 lncRNA upstream 506466 3199332 ~ 3200187 (+) True G152656
TU192233 lncRNA upstream 519665 3184755 ~ 3186988 (+) True G152655
TU192232 lncRNA upstream 521321 3183821 ~ 3185332 (+) False G152655
TU192366 lncRNA downstream 1017 3723913 ~ 3761827 (+) True G152764
TU192522 lncRNA downstream 535970 4258866 ~ 4260635 (+) True G152866
TU192568 lncRNA downstream 569134 4292030 ~ 4292882 (+) True G152906
TU192606 lncRNA downstream 809425 4532321 ~ 4534824 (+) True G152943
TU192772 lncRNA downstream 1467631 5190527 ~ 5190796 (+) True G153080
AMCG00005523 mRNA upstream 53938 3648847 ~ 3652715 (+) True AMCG00005523
AMCG00005526 mRNA upstream 62532 3642889 ~ 3644121 (+) True AMCG00005526
AMCG00005522 mRNA upstream 68842 3633733 ~ 3637811 (+) True AMCG00005522
AMCG00005500 mRNA upstream 399809 3304889 ~ 3306844 (+) True AMCG00005500
AMCG00005499 mRNA upstream 411339 3284870 ~ 3295314 (+) True AMCG00005499
AMCG00005550 mRNA downstream 16512 3739408 ~ 3740831 (+) True AMCG00005550
AMCG00005558 mRNA downstream 43118 3766014 ~ 3788578 (+) True AMCG00005558
AMCG00005559 mRNA downstream 76371 3799267 ~ 3807613 (+) True AMCG00005559
AMCG00005557 mRNA downstream 154518 3877414 ~ 3878187 (+) True AMCG00005557
AMCG00005556 mRNA downstream 163437 3886333 ~ 3889661 (+) True AMCG00005556
TU192254 other upstream 435814 3266742 ~ 3270839 (+) False AMCG00005498
TU192255 other upstream 435814 3266742 ~ 3270839 (+) False AMCG00005498
TU192155 other upstream 857045 2845217 ~ 2849608 (+) True G152588
TU192049 other upstream 1195977 2503910 ~ 2510676 (+) True AMCG00005481
TU192563 other downstream 560164 4283060 ~ 4284963 (+) False AMCG00005538
TU192612 other downstream 837317 4560213 ~ 4561484 (+) False AMCG00005546
TU192781 other downstream 1491927 5214823 ~ 5221915 (+) False AMCG00005583
TU193227 other downstream 2764822 6487718 ~ 6488620 (+) True AMCG00005667
TU193523 other downstream 3537781 7260677 ~ 7265971 (+) True G153675

Expression Profile