RNA id: AMCG00005565


Basic Information

Item Value
RNA id AMCG00005565
length 537
RNA type mRNA
GC content 0.57
exon number 7
gene id AMCG00005565
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4955046 ~ 4966536 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCATCGGACTCCCCCCGCCGCCCCAGCCGCTGTGCCGGTGGAGTGGTGGTGAGAGCTCAGGCAGCCACAGAGCAGTCGTACATGGAGAGTGTGGTGACTTTTCTGCAGGATGTTGTTCCCCAGGCTTACACAGGAGCCCCGCCCACAGACGAGAAGGAGAAGATTTTATGGGTCAGATTTGAAAAAGCAGACATTAATGACATCGCCAGATCCCCCGAGTTCCTCGAGATGCACGGCAGTGCCAGTGACCCTCCACTGTTGCTCATGATTGGATACGCAGATGGGATGCATATCTGGAGTATATCTATCAGTGGAGAAGCCCAGGAGCTGTTTTCGGTGCGTAACGGTCCGGTGCGAGCCGCCAGGGTCCTGCCAGCCCCCCTCATCGGTAAGTATGAGAGTATGGACTCGGCCCATCCCAGGATGCTCgtgTTTCGCGCCTACTGGATTCAACCCAAGTCAAGTCCTCTGAAGGCAGACGGTTTTGCCGAGAAGAGACCTCTCCTCGGGGTCTGCAAAAGTGCCGGCTCCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192605 lncRNA downstream 423314 4531440 ~ 4531732 (-) True G152942
TU192577 lncRNA downstream 654648 4292030 ~ 4300398 (-) True G152915
TU192551 lncRNA downstream 694734 4257221 ~ 4260312 (-) True G152894
TU192507 lncRNA downstream 961525 3989919 ~ 3993521 (-) True G152853
TU192455 lncRNA downstream 1085837 3859796 ~ 3869209 (-) False AMCG00005560
TU192843 lncRNA upstream 384817 5351353 ~ 5352345 (-) True G153141
TU192845 lncRNA upstream 386817 5353353 ~ 5355697 (-) True G153143
TU192894 lncRNA upstream 520773 5487309 ~ 5489599 (-) True G153178
TU192961 lncRNA upstream 681822 5648358 ~ 5648709 (-) True G153236
TU192977 lncRNA upstream 774956 5741492 ~ 5748572 (-) True G153248
AMCG00005563 mRNA downstream 11698 4938151 ~ 4943348 (-) True AMCG00005563
AMCG00005566 mRNA downstream 19539 4932924 ~ 4935507 (-) True AMCG00005566
AMCG00005564 mRNA downstream 33355 4878015 ~ 4921691 (-) True AMCG00005564
AMCG00005542 mRNA downstream 191885 4762567 ~ 4763161 (-) True AMCG00005542
AMCG00005543 mRNA downstream 204076 4749079 ~ 4750970 (-) True AMCG00005543
AMCG00005562 mRNA upstream 1950 4968486 ~ 4983410 (-) True AMCG00005562
AMCG00005581 mRNA upstream 29117 4995653 ~ 5001142 (-) True AMCG00005581
AMCG00005582 mRNA upstream 115821 5082357 ~ 5085799 (-) True AMCG00005582
AMCG00005573 mRNA upstream 192301 5158837 ~ 5161860 (-) True AMCG00005573
AMCG00005572 mRNA upstream 204237 5170773 ~ 5171615 (-) True AMCG00005572
TU192573 other downstream 665154 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 1864332 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 2079037 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 2625362 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 3233844 1708683 ~ 1721202 (-) True AMCG00005461
TU192831 other upstream 334233 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 1114699 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 1523719 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 2819018 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 3032800 7999336 ~ 8001340 (-) False AMCG00005704

Expression Profile