RNA id: AMCG00005568


Basic Information

Item Value
RNA id AMCG00005568
length 1870
RNA type mRNA
GC content 0.51
exon number 8
gene id AMCG00005568
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4004263 ~ 4019746 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGGGTTTTCCCACCGCGttacatcaaataaaacaaatcctcaAATACTTTTTAACGGCGTGTGTTTCATATTTCCTCCAGGGCAGCTGTTTGGGGCACTGAAAGGGGTGGCAGCGCCGTGCCAAGGCGCCGTCACTGCGTGGGACATAACGCGATAACTGGAGACCTTTGGACAGACGCGGAGGCACACAAATCCTCTATTGATATTTATGAAAGATGTCGGCCTCGGATTATGATTGCATTGTGGTGGGAGCGGGGATACAGGGGTCTTTTACCGCTTATCACCTCGCTAAAAATAACGAAAAAACTCTTCTCCTTGAGCAGTTCCTGCTGCCCCACTCCCGCGGCAGTTCCCACGGGCAGACGAGGATCATCCGGAAGGCTTATGAACAGGACTTCTACACACATATGATGGATGACAGTTATGAGCTCTGGTCACAGCTGGAAACAGAGGCCAATGTCCAATTATACAGGCGCACGGGTCTGCTGGTCATGGGCAAGGAGGACGGCCCCGATTTTGAATCGTTTAAAGGCACGCTGCTGCGGAGCGGTGTGCCCAACGAGATCCTCGATCCGGCCCAGTTTGCGCAACGATTCCCCGACGTGCGCCAGATCGAGGGCGACGGTGCCCTCGTAGACAAGACGGCCGGCATTCTGTATGCCGACCGGGCACTTAGAGCTGTGCAGAGTGTGTTTCAGAGACTGGGAGGGGTGATTCGGGACGGAGAGAAAGTGGTTGACATCAGGCCTGGGTTCCCAGTCACAGTGACAACGAGCAGCGCGGTGTACAGAGCCAGGAGCCTGGTCCTCACGGCGGGGCCCTGggtaaacaagctgctgtctcACACCGGACTCCAGCTGCCCCTGCAGgtggagaaaataaatgtctgctACTGGAGAGAAAAGGTTCCTGGCACCTATGGGGTTGGCAGCGAGTTCCCGTGCTTCATTAGGGTGAAATCGCACGGGGCGGCTCATGACATTTATGGTCTACCGTCCAACGAGTACCCAGGACTAATGAAGGTCTGCTATCACGGAGGCAGCGAGACGGATCCAGACGAGAGGGACCAGCAGTCATCACAAGAGGACATTAAGATCCTGTCTCGCTTTTTGGCTCGCTGTTTCCCTGGGCTGCTGTCCACACCGGCTGTTGTGGAGAGCTGCCTGTACACGGTCACTCCAGACTCCCATTTTGTTCTGGACCGTCATCCTACATACGGCAACATCGTCATCGGCGCCGGGTTTTCAGGCCATGGCTTCAAGTTTGGGCCGGTCGTTGGGAAAGTCCTGTGTGAGCTCAGCCTGGGAAAGATGCCCTCCCACGACCTGTCGCCTTTCCGGATCCAGCGCTTCCAATCCCACCCAAAATCGTCCTTATGAACCACGAATCTGCCCATCCTAAAGTGCCCAAATGGCATGCAGAAGAACAGCTGGTAGATAGTGTTCAGTGTAATTAATTTTAGCACTGAATGAGAAGAAACGTCAATCTATATTAAGGACAGTGGATTATGTCTGGAGATTTTTAGCTGATGTGGATTAAAGACATAGGGGGAGGTCCTAATCACATAACACTTCCCCCCACAGCCCAGAGAGATGGGGTTCAAATCAAGACAGAACCAATCACCAACTCTGACTGAATCATGTGAGGATGATGCCAGAGGGAAAAATAAGTGCCAATTCTAGTTTAAACTGAAACTGCATTAAAAGATTATGAGTAAGGTTGATTGTGTGTTGCCCCAATTTGTCTCTTGTTCTGTTCCCGTAGTCGTGTTATGGTGCAATATATCCACACGGGGCAGTATATAAATATTCAGGAATAGGAATAGGAAAGTCCTTTAAATGAGATCCCATTAAAAAATTCAGTTCACA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00306 PIPOX; sarcosine oxidase / L-pipecolate oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192507 lncRNA downstream 10742 3989919 ~ 3993521 (-) True G152853
TU192455 lncRNA downstream 135054 3859796 ~ 3869209 (-) False AMCG00005560
TU192431 lncRNA downstream 211819 3788208 ~ 3792444 (-) True G152815
TU192408 lncRNA downstream 278891 3698811 ~ 3725372 (-) True G152793
TU192414 lncRNA downstream 285827 3714683 ~ 3718436 (-) True G152798
TU192551 lncRNA upstream 237475 4257221 ~ 4260312 (-) True G152894
TU192577 lncRNA upstream 272284 4292030 ~ 4300398 (-) True G152915
TU192605 lncRNA upstream 511694 4531440 ~ 4531732 (-) True G152942
TU192843 lncRNA upstream 1331607 5351353 ~ 5352345 (-) True G153141
TU192845 lncRNA upstream 1333607 5353353 ~ 5355697 (-) True G153143
AMCG00005560 mRNA downstream 135807 3850136 ~ 3868456 (-) True AMCG00005560
AMCG00005561 mRNA downstream 182921 3807765 ~ 3821342 (-) True AMCG00005561
AMCG00005552 mRNA downstream 312156 3652635 ~ 3692107 (-) True AMCG00005552
AMCG00005525 mRNA downstream 371551 3612852 ~ 3632712 (-) False AMCG00005525
AMCG00005524 mRNA downstream 399908 3583401 ~ 3604355 (-) True AMCG00005524
AMCG00005539 mRNA upstream 264971 4284717 ~ 4292871 (-) True AMCG00005539
AMCG00005547 mRNA upstream 514394 4534140 ~ 4536045 (-) True AMCG00005547
AMCG00005549 mRNA upstream 523580 4543326 ~ 4544200 (-) True AMCG00005549
AMCG00005548 mRNA upstream 527331 4547077 ~ 4551659 (-) True AMCG00005548
AMCG00005555 mRNA upstream 541187 4560933 ~ 4596482 (-) True AMCG00005555
TU192222 other downstream 913549 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 1128254 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 1674579 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 2283061 1708683 ~ 1721202 (-) True AMCG00005461
TU191734 other downstream 2388766 1612773 ~ 1615497 (-) False G152271
TU192573 other upstream 268919 4288665 ~ 4289892 (-) False AMCG00005539
TU192831 other upstream 1281023 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 2061489 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 2470509 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 3765808 7785554 ~ 7788321 (-) True G153733

Expression Profile