RNA id: AMCG00005574


Basic Information

Item Value
RNA id AMCG00005574
length 4400
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00005574
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5372461 ~ 5405899 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGACCAAGCGGGAAACGGAGCGCACTGCACAAACAAGGGAGGTGCGAAACAGCCTGTCTGCCTTCATCCGCTTCGGAGCACCGCAGGGACCGGAGGCCATCTTCATCTGCAGCTTCATGGTGGCTGCTCCTATCTTTGGGTACCTTGGCGACCGCTTCAACAGGAAGATCATCCTCAGCTGCGGCATCTTCTTTTGGTCGGCTGTGAccctctccagctccttcaTCACCAAAGAGTATTACTGGCTGTTTGTCCTGTCCAGAGGATTGGTCGGAATTGGAGAATCCAGCTACTCCTCCATCTCACCCACCATCATAGGAGACCTCTTCACAAACAACACACGGACCATGATGCTTTCCATCTTCTACTTTGCAATCCCTCTGGGAAGTGGTTTGGGGTATATCTTGGGATCGAGTGCAAAGCAAGCAGCAGGAGACTGGCACTGGGCTCTGAGGGTGTCTCCAGTCATGGGGATGACAGCAGGAAGTCTCATCCTATTCTTCGTGCCCGAACCCAAGCGCGGCCACGCAGACCAGCTGGGGGGGCGTCTCAAGGCTCGCACACCATGGATCTGTGATATGAAGGCCCTGGCTAAGAACCGCAGTTACATGTTCACCTCGCTGGCGTCAGCGGCAGTGTCCTTCGCCACCGGAGCTTTTGGCATGTGGATCCCCTTGTACCTGTACAGAGCCCAGGTGGTGCAGAATACGGTGATGCCCTGCAACAAGGAGCCCTGCAGCAGCAAGGACAGTGCCTTCCCCTCCCCCAGCCTGATTTTCGGGGTCATAACGTGCGTGACGGGATTCCTGGGCGTCCTGATTGGTGCGGGCGCCACACGGCTGTGCCGGCAGAAGACAGAGCGCGCGGACCCCCTGGTGTGCGCCGTCAGCATGCTGGGCTCGGCGATCTTCATCTGCCTCATCTTCGTTGCTGCCAAGAAGAGCATCGTGGGAGCCTATTACGTGGTGATTCCCACTCGCCGAGCCACCGCGGTCGCCCTACAGAGCTTCGTCTCGCACATCCTGGGCGATGCCGGCAGCCCCTACCTGATTGGCCTGATCTCGGAGGCCCTCCAGAAGAGCTACGCTGACTCCGTCCTGTGGCAATTCCTCAGCCTGGGCTACGCTCTCATGCTTTGCCCGTTCGTCATCGTCTTGGGTGGGATGTTCTTCCTGGCCACAGCCGTCTTCTTCCTAGATGACAGAGACAAGGCAGAGAAACAGTCACAAATTGAGGAGATCTGGAGGATCAGTGGAAGAGGAATTCGCCAGCCGTAAAAACAGGGAGAAGAGGAGATCTCTCATTTGAGAACACATCTCCAGATTAAGattacaagttttttttattattattattatttacagtaactGTTTCAGAAACTGTTTTCAACTGGAAGCCACACTGATCCAAAGAGTCCTCGGTCTCACAGACGCCAATTATGCGCAAGGAGAGGTGAACCAAAAGAACCTGCATCTCTGAAAATCCCTAACTTGGGCTTTGCTCCCACATTAGCACTATTTGAACATGTACTACAATGCCAATAACCAAACTACTGAAGGGGACACAGGGAACTCGTGCCACTTTCCTCCCTGTTGCAAGTGCCATATCATTAGACTTCTTCGTGGATTCCAAACTGGTCGATATAGGAGGTCACTCAAGAGTCAAATCGCTGAACACAAAAAGACCGAGTCAACTACAATGACCTGAAGGTGTCCAGTTCAGCAAAACTGCAGTAGGAGATCTTTTAGATGTTGTTTTTAGCACTTAAACTCATTACCTGAGATGCTTTCTACAGCTGCATAGAAGGATCCTTGGAAATATGAAATGAAGCAAAAGCTAATGACAGAACTGGACAGCAATCCCAATTTGTTGAATCACCCCcacatttgattgtattttaaatcaccCAAATACTCCTCTCCAAAGCAGGGATCGGTTTGGGATGCTCTTCTTGCATAGAAAGTCCAGGGGGTCTCCAGTAAAAAGCCAGCACAGAGGATGGATAATCGACAGCATCGAGGAGAAACCGGTCCTGTCCACGACAGAACACCCTGTCCAAGTTTTTTGTGGTTGCGGGGGATCCAATCCTGGAGGGTTGGAGGTTTGCTTTAGCACAGACGGCCACGCAAATTATGTAGAGGACTTTGCGTCAGGACTTTGGCACAAGTCTAGAATGAAGTCACACACTGAGTCACAGGGACGAATGAAGAATGACCTCTGATCCGTACTCTTGTTTCCACAAACTATCTCACAGCTTGCCTTCGAGCTACTGCATCTGAATAACGACCAGttgaaaaagctttttattttgttccactGGATACTGGTGTCATAGGACTCAATTTGACttgcattaaatgaaaaaaggtcTAAAGAACATTTTTTGGACCCCAAGAACAGGGGAGAAAGATAACTGGAGACAACCTTAAGTTGATGCcaacactgttttgttttttccacgcacaaacacacaaaaataacgCACCTTACTTATCTTATCAAAAGCATTACCTGAACACACCCATGTTCACCTGAAGACCAAAACAAACTAGTTATGAAATGCTTTGATGGGGGAAGAAGAGTGACTCCCCCCCTGCTAGTTTCTTTTGGCTTTCTCTGTATTCTGCCAGAGTGTCTGAACGCTGAGGACACGAGTGTTCAGCCTGTGTGCACAGCGGAGTTATATCTTATCAAgcttcttttattttgtgattgtttAATGGATGTTTTTACAGATATGAgtttatatataagtatatagaGAGATATATCGTGCCgcagtttttaatatattgtatacaataGCTTCAGGATGCAGTGTATTTATACCTTTGTTTAccacaatgaagaaaaaaaaaggagtgGAAGGACATCAGGATCTTCTCAccttagtgtgttttttttattattattgttgttgtttctgctaTGCCGCCCTCTATGTGgcttatacatatatagaatACCATAACAACACCACACCAGAACATCTCAGAGGATTGTGATccattatgtgtttgttttatgacaTCAGTGGTGTAACACACATGTGGAAATGAAAGGGAAGCGCAAGCTCTTTTCTATTgatctctcctctctttcctaGAAATGTCCTGAGTCAGCTCTGTGTATTAATTAAACTCCAGAGAAAGCGGGGGTCAGGATAGTTTTGCTGATGATGCACAGAATCCAGATCTGTTGGTGCAAGCACATCCGGACCCTAATTCTGCcttcccattattattattattttactattattttagcAATTAAAAGGCATCTTTGGATTAACTATTGCACTACACAGATGCCAGATCCTCTAAATTTCATgcataaaataaagaacacatcTCCTTTACAGTCAACAGAACTCTCCACCAAAAaggaacgagagagagagagagaaaatggtgCCAATTGTGGCTCAGGTTGACTTAgaatagaattaaaaacaagaagtgaGGCTTAAGATTAATTCCtgaaaaatgtttgaattattattcCAATTGTTGGGATGAAAGTAGCTTTTTTGATTCGATGAACCAAACCTTTCAGTGTCTGCATCCAAAGCGAATGCATTGCTGCCCTACAAGCTAATTAATTCATAGCACTTTTTCATGACAGGTGAGCCAATCGCCCAATTTCTGCAACTGACCTCAGCTCAGTCCTGGGCTTTGTGTGTAAGTGAAGCCCAGACAGATTTTTCCTCatgaacaggaaaataaaataaaaaaagctagtGACATTGGTTGAGCACTGGTATCTCTTGTTATGGCTGAAGAGGGTAGCAGTGGGGGTGGAGATGTTTAAATTGATCCAGGACACAAACTAAGATGAGTCTAACCCTCTCAAGCATGTATTCCACATTGCACTTTTGGACAATCGTTAATAAAACCGGGGCTGTACAGAGATATATCATGTGCACCATTAGGACATACATAGCAGACCCATTAGAAAAGTACAACCCAGACATTGGTCACCCCCAAGCATTTCCCATTTTGAAACCCTGGTTATAAAGTTGCTTTGTGAGTTTCATGTGTTCTGTTGTTATGTATTATAAGAAACTAAAGAAAGCTACATACCTGGTTGACAATGCCAAAATCAGATTCTAGCTctccttttaaataatgtttgtttttgttgttttttttaaatcaaatgttaattaaatagcaCCTGTCCATCACAAAAGTGATCAGATTGTGCGCTTTCTTGTCATACAAGAATTGTGTAAAAAGAGAATCCTATTTCTGATGTGATGCAGAAAAAagagactttttattttttagagcCAGTGTAATTAAATCTAGGAAGTAACTGTGATACTCCAACACGGAGCAGATGAAATGTACACctatatgtaaattataaaataaacttatttAATCACAAGAGA

Function

GO: NA

KEGG:

id description
K23677 SPNS; MFS transporter, Spinster family, sphingosine-1-phosphate transporter

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192845 lncRNA downstream 16764 5353353 ~ 5355697 (-) True G153143
TU192843 lncRNA downstream 20116 5351353 ~ 5352345 (-) True G153141
TU192605 lncRNA downstream 840729 4531440 ~ 4531732 (-) True G152942
TU192577 lncRNA downstream 1072063 4292030 ~ 4300398 (-) True G152915
TU192551 lncRNA downstream 1112149 4257221 ~ 4260312 (-) True G152894
TU192894 lncRNA upstream 81410 5487309 ~ 5489599 (-) True G153178
TU192961 lncRNA upstream 242459 5648358 ~ 5648709 (-) True G153236
TU192977 lncRNA upstream 335593 5741492 ~ 5748572 (-) True G153248
TU193002 lncRNA upstream 394749 5800648 ~ 5800906 (-) True G153272
TU193058 lncRNA upstream 642231 6048130 ~ 6048470 (-) True G153313
AMCG00005616 mRNA downstream 24193 5344509 ~ 5348268 (-) True AMCG00005616
AMCG00005620 mRNA downstream 34933 5317898 ~ 5337528 (-) True AMCG00005620
AMCG00005617 mRNA downstream 59487 5310659 ~ 5312974 (-) True AMCG00005617
AMCG00005618 mRNA downstream 62529 5306588 ~ 5309932 (-) True AMCG00005618
AMCG00005619 mRNA downstream 75908 5283576 ~ 5296553 (-) True AMCG00005619
AMCG00005576 mRNA upstream 38262 5444161 ~ 5444610 (-) True AMCG00005576
AMCG00005575 mRNA upstream 55020 5460919 ~ 5467836 (-) True AMCG00005575
AMCG00005625 mRNA upstream 102353 5508252 ~ 5513394 (-) True AMCG00005625
AMCG00005606 mRNA upstream 260961 5666860 ~ 5709455 (-) True AMCG00005606
AMCG00005605 mRNA upstream 342877 5748776 ~ 5751438 (-) True AMCG00005605
TU192831 other downstream 70263 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 1082569 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 2281747 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 2496452 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 3042777 2197354 ~ 2329684 (-) False AMCG00005532
TU193087 other upstream 675336 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 1084356 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 2379655 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 2593437 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 2685849 8091748 ~ 8124685 (-) True G153806

Expression Profile