RNA id: AMCG00005575


Basic Information

Item Value
RNA id AMCG00005575
length 1913
RNA type mRNA
GC content 0.52
exon number 12
gene id AMCG00005575
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5460919 ~ 5467836 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGCAGCTGAGCCGGAAGGCGAAAGGTCGCTCCCAACGTCAGGAGCTGCTCGTGATTATGGCTCCGTGAGCGAGAACCAACCGAGGCCTGAAACACCGACAACAGGCGCCCCTGTCCGCTCTTGTCGATACTACGTAGCGGTTGCAGTTCTTTGTTACATCAACCTTATCAACTACATGGATCGCTACACCATAGCAGGTGTTCTTCTGAACATCCAGACATTTTTTGATATTAGCGACCGCACAAGTGGACTGCTGCAGACAGTGTTCATCTGTACCTTCATGCTGTTGGCCCCACTGTTTGGATACCTCGGAGACCGATACAACAGGAAGTTCATCATGATAGGAGGCCTGAGTGTGTGGATTGTGACCACGCTGACCAGCTCCTTTGTGACTCAGTCGCAATTCTGGCTGCTACTGCTGATGAGAAGTCTGGTGGGCACCGGAGAGGCCAGCTACTCCACCATCGCTCCCACCATCATCGGAGACTTCTTCTCTGGCAGCAAGAGAACCTTGATGATCTCCTTCTTCTACATTTTCATTCCTGTTGGAAGTGGTCTGGGCTACATCATTGGATCGAGGGTTGCAAGTGATCTAGGGGACTGGCGCTGGGCACTCAGGATCAATCCTATCCTGGGAGTGGTCGGTCTCATTCTGCTCATCCTGCTGGTTCCCAACCCAACCAGAGGTGCTTCCGATGTCCAGGACGGAGTGGAAATGGAGCGGACCTCCTACCTGGCAGACATCAAGTACCTTCTGAAAAATCGCAGTTTCGTCTGGTCCTCTCTGGGAGTCACAGCCATGGCTTTTGTCACTGGTGCCCTGGCCTTCTGGACACCCGTGTTCCTGTCCCGAGCACAGGTCATGCAGGGAATCAAGAGGCCCTGCAAGCAGGAGCCCTGTGATACATCTGACAGCTTAGTGTTTGGTGCAGTCACTGTGGTGACGGGGATTCTGGGCGTGTTCATCGGCACATCGCTTGCCAGGTTGCTGCGGAACAGGATCCCTCATGCGGACCCCCTGATCTGCGGAGTGGGCATGCTCAGCTCCGCCCCCTGCTTCTACCTGGCCATCATACTGGCCTACAGGAGTATACCGGCGACTTACAGTGAATCCTCAGAGCTGCCCGTCTCTCCTCTGTCAGTCCAGGTGTTCATTGCTCTGGGGGAGACACTGCTGGCTCTTAACTGGCCTCTTCTGGCTGACATCCTGTTGTACGTTGTTGTACCAACCAGACGGGCGACAGCAGAGGCTTTACAGATCATGGTCTGTCATCTTCTTGGCGATGCTGGCAGTCCTTTCCTGATTGGCGCGATCTCAGATGCTCTGGGTAAAGGGAAGGCAGATTCGGTCATCTTGAAGTTCAGGAATCTGGAGTACAGTTTTCTCCTGTGCCCTTTTGTGGGAGTTCTGGGGGGCCTGTTTTTCCTCTTCACCGCTCTCTACGTGACGGAGGACAGGAAAACTGCCCAGCAACTGGCTGCAGGAGAGATACAGGGGAGCTGAGAGCTGGTTCTGTCTGTGGGGGTGACTGGGGGTGATCGCTGAGGAAGACCTGCTTAGGCCTGGAGTGCCAAGACAGTCCTCATCCTGCTGCTCAACTCATCTGAGACCATGCTGCAGGTTCGACAGTCAGGAACTGGTCTCACACAACCACAACAGCAATATCCTGCCAAGTACTGTACTTAAGATACTCCACCTTATATTAGAAAATACACAACTGCTTTTTATTGAATGGGTTCCCTGTTGTGATCATGTTTGGGTTTTAAATGGGGGgatttttactgttttttaatgtaatatttttaaacaacctCAGACAATGTATGCAATGGACAAACACTGGGCAGGGGTCCTTTATGCAGTTTAGGTGTCTTTAAACAAGCCTTTACTCTTGGCACAACTCTGTG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006869 lipid transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23677 SPNS; MFS transporter, Spinster family, sphingosine-1-phosphate transporter

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192845 lncRNA downstream 105222 5353353 ~ 5355697 (-) True G153143
TU192843 lncRNA downstream 108574 5351353 ~ 5352345 (-) True G153141
TU192605 lncRNA downstream 929187 4531440 ~ 4531732 (-) True G152942
TU192577 lncRNA downstream 1160521 4292030 ~ 4300398 (-) True G152915
TU192551 lncRNA downstream 1200607 4257221 ~ 4260312 (-) True G152894
TU192894 lncRNA upstream 19473 5487309 ~ 5489599 (-) True G153178
TU192961 lncRNA upstream 180522 5648358 ~ 5648709 (-) True G153236
TU192977 lncRNA upstream 273656 5741492 ~ 5748572 (-) True G153248
TU193002 lncRNA upstream 332812 5800648 ~ 5800906 (-) True G153272
TU193058 lncRNA upstream 580294 6048130 ~ 6048470 (-) True G153313
AMCG00005576 mRNA downstream 16309 5444161 ~ 5444610 (-) True AMCG00005576
AMCG00005574 mRNA downstream 55020 5372461 ~ 5405899 (-) True AMCG00005574
AMCG00005616 mRNA downstream 112651 5344509 ~ 5348268 (-) True AMCG00005616
AMCG00005620 mRNA downstream 123391 5317898 ~ 5337528 (-) True AMCG00005620
AMCG00005617 mRNA downstream 147945 5310659 ~ 5312974 (-) True AMCG00005617
AMCG00005625 mRNA upstream 40416 5508252 ~ 5513394 (-) True AMCG00005625
AMCG00005606 mRNA upstream 199024 5666860 ~ 5709455 (-) True AMCG00005606
AMCG00005605 mRNA upstream 280940 5748776 ~ 5751438 (-) True AMCG00005605
AMCG00005610 mRNA upstream 452364 5920200 ~ 5931156 (-) True AMCG00005610
AMCG00005611 mRNA upstream 468979 5936815 ~ 5947317 (-) True AMCG00005611
TU192831 other downstream 158721 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 1171027 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 2370205 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 2584910 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 3131235 2197354 ~ 2329684 (-) False AMCG00005532
TU193087 other upstream 613399 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 1022419 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 2317718 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 2531500 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 2623912 8091748 ~ 8124685 (-) True G153806

Expression Profile