RNA id: AMCG00005576


Basic Information

Item Value
RNA id AMCG00005576
length 333
RNA type mRNA
GC content 0.58
exon number 2
gene id AMCG00005576
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5444161 ~ 5444610 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCGTGGAAAGCGATGGATGTGAGATCGAGGGCTGCAGCAGCTCGGATGAGGTCCACACACTGTCCGGCAGCATGAGCCCCGGACTGAAGTCCAGCCCCGACCTCCATCCCTGCAAACCCGGGCAGAAATTCCGCGCCGCGCTGCTGAGGTGCCGCTCTCCCGTGGCGGCTGCGGGGATCCTGAGTTTTGGGAATGTGCTCAATTACATGGACAGGTACACCGTGGCAGACACCACCAATGCGCCGCTTGGCTTTATTTCCTTTTACCTCTGCCACACTTTTAAGGGATGTGTAGTCAGCGTCCATAACCCAAACGTGTCGAAGATCTGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192845 lncRNA downstream 88464 5353353 ~ 5355697 (-) True G153143
TU192843 lncRNA downstream 91816 5351353 ~ 5352345 (-) True G153141
TU192605 lncRNA downstream 912429 4531440 ~ 4531732 (-) True G152942
TU192577 lncRNA downstream 1143763 4292030 ~ 4300398 (-) True G152915
TU192551 lncRNA downstream 1183849 4257221 ~ 4260312 (-) True G152894
TU192894 lncRNA upstream 42699 5487309 ~ 5489599 (-) True G153178
TU192961 lncRNA upstream 203748 5648358 ~ 5648709 (-) True G153236
TU192977 lncRNA upstream 296882 5741492 ~ 5748572 (-) True G153248
TU193002 lncRNA upstream 356038 5800648 ~ 5800906 (-) True G153272
TU193058 lncRNA upstream 603520 6048130 ~ 6048470 (-) True G153313
AMCG00005574 mRNA downstream 38262 5372461 ~ 5405899 (-) True AMCG00005574
AMCG00005616 mRNA downstream 95893 5344509 ~ 5348268 (-) True AMCG00005616
AMCG00005620 mRNA downstream 106633 5317898 ~ 5337528 (-) True AMCG00005620
AMCG00005617 mRNA downstream 131187 5310659 ~ 5312974 (-) True AMCG00005617
AMCG00005618 mRNA downstream 134229 5306588 ~ 5309932 (-) True AMCG00005618
AMCG00005575 mRNA upstream 16309 5460919 ~ 5467836 (-) True AMCG00005575
AMCG00005625 mRNA upstream 63642 5508252 ~ 5513394 (-) True AMCG00005625
AMCG00005606 mRNA upstream 222250 5666860 ~ 5709455 (-) True AMCG00005606
AMCG00005605 mRNA upstream 304166 5748776 ~ 5751438 (-) True AMCG00005605
AMCG00005610 mRNA upstream 475590 5920200 ~ 5931156 (-) True AMCG00005610
TU192831 other downstream 141963 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 1154269 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 2353447 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 2568152 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 3114477 2197354 ~ 2329684 (-) False AMCG00005532
TU193087 other upstream 636625 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 1045645 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 2340944 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 2554726 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 2647138 8091748 ~ 8124685 (-) True G153806

Expression Profile