RNA id: AMCG00005588


Basic Information

Item Value
RNA id AMCG00005588
length 2023
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00005588
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5195219 ~ 5206581 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGTgaagGACGCGAATGCTGCGATGCTCAGCAATTACGAGGTCTTCCAGCTGCTGACCGACCTAAAAGACCAGAGGAAAGAGACGAAGAACAAGCACAGTGCTGGACAGCAGAACCTCAACACCATCATGTATGAGACGCTGAAGTATTTGTCGAAGACTCCCTGTGCCCGCCAGAGCCCCGAAATGGTGACCGAGTTCCTAACCTCCATGTTGCCACACAAACTCACAAAGGCCGAGAAACTCCAGCTCCTGAATCACAGGCCGCAGACGGCGATGGTGGAGGAGAGTGAAGAGAGGCTGACGGAGGAGCAGATCGAGGAGCTGCTCCAGAAAGTGACAGACATCCTCCCCGGGGACCCCGAGAAGGACTGCGCCCCCGCCCCCGAGGAAGCCGAGATGGAGGAAGGGGAGGCTCAATAATGCCCCGGCGCCCCGACTGCCCCTGGCTGCCACCCGTTTCCTTCATCGACCAGGGATCAGACCGTACGTCACGTGGTCAACCGAGTGCCGGGATGTTACAATGCTTGCACCCGAGTCTCTTTAGTTTCCTTTCAGAAAGCCACAGTTAGCACTTACCCCCGTGGTACCTTTCCCTGTCTTGACCGAAGATCTCTACAGGGTGTATATTTTGGTAACTCTACTCTCAAGGGTGAGGGAGTAGAAGCTGGGGGTAGATGTTTCTTCACCTCGCCACGGCTGACCCTTCCAAACTGGGCTCTGTGAACAGCTTGGCAGGGTCCGCTTGGCTTCTCTCTCCTTACTGAACAGGACATTTTGAATTGGCATGAAGAATATTGATAGTGGATGCATAAATATTGTCACTTTTTGCAAATCAGTTGATTTCTATTCTTAAAAGACCCTGCTTTAATGTAAACGACCCATTGTTTCCGATTCACAATTTAAACTGGTTTTCCTCGGCCTACTGGAAGGCAAGCAGGCAAGCGAGTCGGTCTGTAGACTGTAGATGAGATAAACAACACTCGTACACCCACTTGGTTTCATTCTGCATCTCGTTCTCGTTCTGGCTCtcggcttttttttttttttttctcctcctggCACTTTTTCCCACCCAAgacaggctttttatttttaattgcagcGACAGCTACAGGAGACTGAGAGCCTGTCTTCTTGTGTTTAGCAAGCGTGTATCAGAGCCTTGGAACGAGTCGAAGAAGCTGAGAAACCACATCAAGCTGCATGCCTAATGCAGCGCTTCGAGTGCATGAAGAACGACTGAATGTGTGCAGGGTGacgtttttttcatttttattttgaaagcctCAGCAGTTACCGGCGTCTGTGAAGTGCCATGTCAGGGAGAAGCAAAGTTCAAGTGAGGCCTCAGAAAGGGTTCACTCGCGATCTTCCCGTTTGTGTTTTCCGGAGTGGTCTTGCATGTGGTTCAGCACGAAATGTTCCTCTGTGcctgcatttaataaataaataaatacaaaccatATTCACATGGATTTGTAGTCATTCCTTCGctgtcacttaaaaaaaaaaaagtagtagaTCATAACCTATGTGCTTTAAATTTCTAATTTGTGGAGAAAATACTGTGGGTTGAGGGCAATTCCACAAGAGCTGATGAATTGGATGTAAATGCAGAGAAAACATCCTGGATTTTAAACAGTCGTCGATGTTCTGACCTGAACCCACTGATAATGCAAGGCAGCTTATAAGAAATTCCCCCTTTCCAAACTCGAATTACTGGCCTCTCTGGGCCTCTGCTATCTCTCCCCACAAGGTGCTCACAGTTAATTAGACAGGCTTTCAGAGTTTTTGTTTACCCCTTTAGTTCTTATAAGGCAGTTGTGGTTAATTTGGCTGTTGTGTGGggtgaggttttgttttttgttttttcgtgGTGTTTGCAGCTGGCAACTGCACTTTGAAGTCCAGTTCCAAAttcaaatgttgtaaaatgaatttaaaCCTAAATGCTTCGTGAGCAATCGTAAATATGACcagattttctcttttctctttttttgttgatTCAGAAGGa

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192605 lncRNA downstream 663487 4531440 ~ 4531732 (-) True G152942
TU192577 lncRNA downstream 894821 4292030 ~ 4300398 (-) True G152915
TU192551 lncRNA downstream 934907 4257221 ~ 4260312 (-) True G152894
TU192507 lncRNA downstream 1201698 3989919 ~ 3993521 (-) True G152853
TU192455 lncRNA downstream 1326010 3859796 ~ 3869209 (-) False AMCG00005560
TU192843 lncRNA upstream 144772 5351353 ~ 5352345 (-) True G153141
TU192845 lncRNA upstream 146772 5353353 ~ 5355697 (-) True G153143
TU192894 lncRNA upstream 280728 5487309 ~ 5489599 (-) True G153178
TU192961 lncRNA upstream 441777 5648358 ~ 5648709 (-) True G153236
TU192977 lncRNA upstream 534911 5741492 ~ 5748572 (-) True G153248
AMCG00005572 mRNA downstream 23604 5170773 ~ 5171615 (-) True AMCG00005572
AMCG00005573 mRNA downstream 33359 5158837 ~ 5161860 (-) True AMCG00005573
AMCG00005582 mRNA downstream 109420 5082357 ~ 5085799 (-) True AMCG00005582
AMCG00005581 mRNA downstream 194077 4995653 ~ 5001142 (-) True AMCG00005581
AMCG00005562 mRNA downstream 211809 4968486 ~ 4983410 (-) True AMCG00005562
AMCG00005587 mRNA upstream 35220 5241801 ~ 5244322 (-) True AMCG00005587
AMCG00005586 mRNA upstream 42793 5249374 ~ 5268678 (-) True AMCG00005586
AMCG00005619 mRNA upstream 76995 5283576 ~ 5296553 (-) True AMCG00005619
AMCG00005618 mRNA upstream 100007 5306588 ~ 5309932 (-) True AMCG00005618
AMCG00005617 mRNA upstream 104078 5310659 ~ 5312974 (-) True AMCG00005617
TU192573 other downstream 905327 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 2104505 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 2319210 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 2865535 2197354 ~ 2329684 (-) False AMCG00005532
TU191793 other downstream 3474017 1708683 ~ 1721202 (-) True AMCG00005461
TU192831 other upstream 94188 5300769 ~ 5302198 (-) True G153130
TU193087 other upstream 874654 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 1283674 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 2578973 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 2792755 7999336 ~ 8001340 (-) False AMCG00005704

Expression Profile