RNA id: AMCG00005601


Basic Information

Item Value
RNA id AMCG00005601
length 1009
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00005601
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 6070192 ~ 6072666 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCGACGCAGAGAGATGACGTACTCTGCACCTCGACGGAAGTGCCCGTGTACTGTTGATTTGCAAGAAAGCAGAAAACGGCATTGCTATCCTCGTTGAAATAGAGTTACAGACTATCCCCCTTTCTCCGGAATGGCGTTGGAAACGGTCCCGAAGGACCTCCGGCATCTGCGGGCTTGTCTCCTGTGCTCCCTCATCAAGACTATTGACCAGTTCGAGTACGACGGCTGCGATAACTGTGAAGCCTACCTGCAGATGAAGGGAAACCGGGAGATGGTGTATGACTGCACTAGTTCCTCGTTTGACGGGGTCATCGCAATGATGAGCCCAGAAGATAGCTGGGTGGCAAAATGGCAAAGAATCAGTAACTTCAAGCCAGGTGTCTATGGCGTCACAGTGACCGGAAGATTACCTCCAGGCATTGTGAGAGAACTGAAAAGCAGAGGAGTGATTTACAAATCCAGAGACACGGCCGTCAAGACATAACCGGCTTTCTCCTTTGGGAGGgttcatgtaaatatttagaCTTCAGATATGCCTGTTAAACTTGGACACGGTATTGCTTTAATGGCAGCAAATACTCCCTCAGTACTCAACAAATCCATTTTTAACGACAGTCACAATCAAGTTTTTGTTCTGTAGTGTTGTgcgaagatttattttgttaattaaacatcCAGTGAGTAACATCACATGTGTCTTCATTCCACTAAAAGATGGGCAAGGGATGTCGGCTGCCATTGTAGTAAAATACAGTTTGGTAGTTAGAATTGTTAACCTTGATATATTTTTGGTAATATCAATATCATTTGGAGCTTGTGGTCCTATAATAAAGTTGTTTTGActttaattaaagatgaatgtgAAAGGAACACATTAAAAATGGGTTATTGTCACCAGAATAAACAAACCTTGTCTATAATTTAATTAGACTGTTTACTCttgattcattcattaaagCATTAAACCACTCTTAATATTTTTGACTTAACGCAGGGCAGGGTTTAAT

Function

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0032786 positive regulation of DNA-templated transcription, elongation biological_process
GO:0032044 DSIF complex cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K15171 SUPT4H1, SPT4; transcription elongation factor SPT4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193069 lncRNA downstream 1178 6068787 ~ 6069014 (-) True G153324
TU193058 lncRNA downstream 21722 6048130 ~ 6048470 (-) True G153313
TU193002 lncRNA downstream 269286 5800648 ~ 5800906 (-) True G153272
TU192977 lncRNA downstream 321620 5741492 ~ 5748572 (-) True G153248
TU192961 lncRNA downstream 421483 5648358 ~ 5648709 (-) True G153236
TU193123 lncRNA upstream 159500 6232166 ~ 6234028 (-) True AMCG00005628
TU193124 lncRNA upstream 161462 6234128 ~ 6234359 (-) True G153373
TU193125 lncRNA upstream 161882 6234548 ~ 6234858 (-) True G153374
TU193126 lncRNA upstream 162517 6235183 ~ 6235409 (-) True G153375
TU193131 lncRNA upstream 167736 6240402 ~ 6257172 (-) True G153379
AMCG00005611 mRNA downstream 122875 5936815 ~ 5947317 (-) True AMCG00005611
AMCG00005610 mRNA downstream 139036 5920200 ~ 5931156 (-) True AMCG00005610
AMCG00005605 mRNA downstream 318754 5748776 ~ 5751438 (-) True AMCG00005605
AMCG00005606 mRNA downstream 360737 5666860 ~ 5709455 (-) True AMCG00005606
AMCG00005625 mRNA downstream 556798 5508252 ~ 5513394 (-) True AMCG00005625
AMCG00005598 mRNA upstream 86059 6158725 ~ 6170298 (-) True AMCG00005598
AMCG00005628 mRNA upstream 159493 6232159 ~ 6234020 (-) False AMCG00005628
AMCG00005629 mRNA upstream 174484 6247150 ~ 6255757 (-) True AMCG00005629
AMCG00005638 mRNA upstream 215803 6288469 ~ 6296947 (-) True AMCG00005638
AMCG00005642 mRNA upstream 233167 6305833 ~ 6309531 (-) True AMCG00005642
TU192831 other downstream 767994 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 1780300 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 2979478 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 3194183 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 3740508 2197354 ~ 2329684 (-) False AMCG00005532
TU193087 other upstream 8569 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 417589 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 1712888 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 1926670 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 2019082 8091748 ~ 8124685 (-) True G153806

Expression Profile