RNA id: AMCG00005609



Basic Information


Item Value
RNA id AMCG00005609
length 1188
RNA type mRNA
GC content 0.63
exon number 5
gene id AMCG00005609
representative True

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5891753 ~ 5896304 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AAGATTAAACCTACGCCTGCTTCCCCAAGTCTACAGACTTCAGTGTCGCCCGAAAGCAAAGTGCATAAAACGCTCGGCCGGAGCCCCGGGCGGCTGTCCGCCACGTCGGGGGATGAGAGGCCGCAGGGGTGGCGCCGGTCTCGATCGGTCTCCTCCGGTAAACGCAGCAGCCGCCAGAGGGTCCCTGTGATGACGGCGCGCTCGCCTGCACACACGGGCTGCAGCAGCGACTCCGGACAATCCCAGCGCAGTCTGACCCAGAAGAACAAAAGCACACCGCTTAAAAAGTATGTTCcacacactatactgcactttactgtaccacactgcagTCTCACCTGCTGTGCCATCTACTCGACCTTCAGCGCCTCGGTGAACATTGCCCCATCTCACAATGATGTCAGTCACCCCACAGAGGTGTGCTTCACTGAGCTGCCTGTTCTTCTGCAGGAAACTCTGCACAGATATGTCCATATGGTGAAGGGCCCACACGCCTCCCAACGGCACCGCCGCCACCGAGCCGCCGGCCGGCACAGGAGCCCATCAGTGTCGTCCGTCAAGCAGGAGAGGCACGGGCGGCACTCGGGCGGCAGGAAGAAGAGCTCGTCACGCAGCCTGTGCCAGCGGAGCAGCTCCTGGAGCAGCAGTCCCTCGCCCTCCCGCTCCCACTCCCGAGAGCGGCAGAGCAAGGCCAAGTCCCCGCACTCCCGGCAGAACGCCTCCCGGGAGAAGGACAGTGAGGGACGGGCTCATCACACGGACACAGAGAGCCGAACTCGCCGGCGCTCCCGGAGTTACTCCCCCATCAGGAAGAGGCGGAGGGACTCACCCAGCTTCATGGAGCCGAGGAGGATCACGAGAATTCAGCAGGGGCAGCGCACGCAAGCGGCCCATCCCCTACTACAGGCCCAGCCCGTCCTCCCCCAGTTCGCTGAGCAGCTACTCCACCTCcagccggagccggagccgcAGTTACGACAGCTACAGCAGCTACAGCCGCAGCCGAACGCCCAGCCGCAGCAGGAGTCGGTCGAGGAGTCCGAGCCGCAATCACAGCTATTACAGCCGCAGCAGCTCGGAAAGCCCGGGCTTCTGAAGCGGCCCCACGGCGTCGGGATGCCCCCTCTGATCCAACCCCAGCAAGACTTCAGCCCAGAGCAGACCTCTCAGGCTTCTCTCAGAATTTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU193001 lncRNA upstream 90861 5800648 ~ 5800892 (+) True G153271
TU192858 lncRNA upstream 446496 5444379 ~ 5445257 (+) True G153154
TU192816 lncRNA upstream 567830 5321060 ~ 5323923 (+) True G153118
TU192811 lncRNA upstream 582662 5307945 ~ 5309091 (+) True G153113
TU192775 lncRNA upstream 690218 5195788 ~ 5201535 (+) True G153082
TU193006 lncRNA downstream 20531 5916835 ~ 5955451 (+) True G153274
TU193057 lncRNA downstream 151826 6048130 ~ 6048438 (+) True G153312
TU193099 lncRNA downstream 335855 6232159 ~ 6234047 (+) True G153348
TU193133 lncRNA downstream 386684 6282988 ~ 6331371 (+) True G153381
TU193146 lncRNA downstream 436948 6333252 ~ 6393728 (+) True G153390
AMCG00005607 mRNA upstream 9462 5868340 ~ 5882291 (+) True AMCG00005607
AMCG00005594 mRNA upstream 45269 5845595 ~ 5846484 (+) True AMCG00005594
AMCG00005595 mRNA upstream 89697 5785094 ~ 5802056 (+) True AMCG00005595
AMCG00005596 mRNA upstream 107419 5776514 ~ 5784334 (+) True AMCG00005596
AMCG00005604 mRNA upstream 119694 5752537 ~ 5772059 (+) True AMCG00005604
AMCG00005608 mRNA downstream 5187 5901491 ~ 5904639 (+) True AMCG00005608
AMCG00005600 mRNA downstream 108088 6004392 ~ 6045735 (+) True AMCG00005600
AMCG00005599 mRNA downstream 176922 6073226 ~ 6077726 (+) True AMCG00005599
AMCG00005597 mRNA downstream 254995 6151299 ~ 6155374 (+) True AMCG00005597
AMCG00005626 mRNA downstream 309514 6205818 ~ 6229880 (+) True AMCG00005626
TU192781 other upstream 669838 5214823 ~ 5221915 (+) False AMCG00005583
TU192612 other upstream 1330269 4560213 ~ 4561484 (+) False AMCG00005546
TU192563 other upstream 1606790 4283060 ~ 4284963 (+) False AMCG00005538
TU192254 other upstream 2620914 3266742 ~ 3270839 (+) False AMCG00005498
TU193227 other downstream 591414 6487718 ~ 6488620 (+) True AMCG00005667
TU193523 other downstream 1364373 7260677 ~ 7265971 (+) True G153675
TU193739 other downstream 2319586 8215890 ~ 8230590 (+) False G153815
TU193852 other downstream 2607891 8504195 ~ 8507075 (+) False AMCG00005720
TU194290 other downstream 3539596 9435900 ~ 9438269 (+) True G154251

Expression Profile