RNA id: AMCG00005611


Basic Information

Item Value
RNA id AMCG00005611
length 1278
RNA type mRNA
GC content 0.61
exon number 9
gene id AMCG00005611
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5936815 ~ 5947317 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGCTCCTGGCTGCATTCCTGATGTCCTTCCTCCTTGTGGTTTTCATGAGTTTCGTCCTTCAGTTCGCCAACTGGACCGTGCCACCACTGCCCTCACAAGGGGGTGAACTGAGCCTGGGCCAGTGTGGAAGTTTGGGTTGGGGGATCCACAACTGTTACCACTACGAGGATGTGGCTGTGACTTGCAAAGACACATCTGTCCTGACAATACGAGACCAAAGTGGCTCCGCGACACCAGCTCCGCAGCTCAAGGGACTACGAGATGGCACCATCCGTCTGGTGAGCGGCCCCGACTCCTGCCAGGGCCGAGTGGAGATCTTTTACCAGGGGAGCTGGGGCACGGTGTGCGACGATGACTGGGGCATGAGGGACGCCGGTGTGGTGTGCCAGCAGATTGGCTGCGGCCATGCCCAGGAATACACCACCAACGCCTACTTTGGCTACGGCACCGGCCTCATCCTCCTCGACAATGTCAACTGCAACGGCAATGAGCAACTGCTGTCCTCCTGCTACAGCCTGGGCTGGGGCATCCACAACTGCGGCCATCATGAGGACGCGGGAGTGATCTGCACAGGTTCGGGGACCACGCCGACTGTCCCGAATTTCACCGGTACGTTGGCCAGAGCTCTGCTGCCGAGAACGGACAGCACAGCAGtcGGCGGCTCGATCCGCGTGGTCAACGGGAACAGTAGCTGCCAGGGCCGGGTGGAGGTGTTCCACAATGGCGTCTGGGGCACGGTGTGTGACGATGACTGGGACATGAACAATGCCCAGGTGGTGTGCAGGCAGCTGGGGTGCGGCCCCGCCATTGCCGCCAAACCGCTGGGCTTCTTCGGCTATGGCACCGGGCCCATCCTGCTGGACAACGTTGACTGCATTGGCAAGGAGCTCTACCTCACCGACTGCTTCAACCTGGGTTGGGGCCAGCACAACTGTGGCCACCACGAGGACGCAGGCGTGATCTGCAATGCAATCGAAAGCACCACAGCATCTAAACTGTTGACCACGAAGAGTACGACAGCGCAGTGGGGCACGGTGTGTGACGATGCCTGGGACGTGAAGGACGCCTCGGTGGTGTGCCGCCAGCTGGGCTGCGGGGAGGCCATGACCGCCCAACCCGAGGCCTTCTTTGGCCGGGGCAGCGGGACCATCCTCCTGGACAATTTGAAATGCAAGGGCAACGAGACCTCGCTGCTCCTCTGCTCCCACATACCGTGGAACGTCCACAACTGTGACCACTCAGAGGACGCCGGGGTGACGTGCACACTGTCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193002 lncRNA downstream 135909 5800648 ~ 5800906 (-) True G153272
TU192977 lncRNA downstream 188243 5741492 ~ 5748572 (-) True G153248
TU192961 lncRNA downstream 288106 5648358 ~ 5648709 (-) True G153236
TU192894 lncRNA downstream 447216 5487309 ~ 5489599 (-) True G153178
TU192845 lncRNA downstream 581118 5353353 ~ 5355697 (-) True G153143
TU193058 lncRNA upstream 100813 6048130 ~ 6048470 (-) True G153313
TU193069 lncRNA upstream 121470 6068787 ~ 6069014 (-) True G153324
TU193123 lncRNA upstream 284849 6232166 ~ 6234028 (-) True AMCG00005628
TU193124 lncRNA upstream 286811 6234128 ~ 6234359 (-) True G153373
TU193125 lncRNA upstream 287231 6234548 ~ 6234858 (-) True G153374
AMCG00005610 mRNA downstream 5659 5920200 ~ 5931156 (-) True AMCG00005610
AMCG00005605 mRNA downstream 185377 5748776 ~ 5751438 (-) True AMCG00005605
AMCG00005606 mRNA downstream 227360 5666860 ~ 5709455 (-) True AMCG00005606
AMCG00005625 mRNA downstream 423421 5508252 ~ 5513394 (-) True AMCG00005625
AMCG00005575 mRNA downstream 468979 5460919 ~ 5467836 (-) True AMCG00005575
AMCG00005601 mRNA upstream 122875 6070192 ~ 6072666 (-) True AMCG00005601
AMCG00005598 mRNA upstream 211408 6158725 ~ 6170298 (-) True AMCG00005598
AMCG00005628 mRNA upstream 284842 6232159 ~ 6234020 (-) False AMCG00005628
AMCG00005629 mRNA upstream 299833 6247150 ~ 6255757 (-) True AMCG00005629
AMCG00005638 mRNA upstream 341152 6288469 ~ 6296947 (-) True AMCG00005638
TU192831 other downstream 634617 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 1646923 4288665 ~ 4289892 (-) False AMCG00005539
TU192222 other downstream 2846101 3071860 ~ 3090714 (-) False G152645
TU192197 other downstream 3060806 2875286 ~ 2876009 (-) False AMCG00005491
TU191946 other downstream 3607131 2197354 ~ 2329684 (-) False AMCG00005532
TU193087 other upstream 133918 6081235 ~ 6082866 (-) True G153342
TU193235 other upstream 542938 6490255 ~ 6496571 (-) True AMCG00005674
TU193605 other upstream 1838237 7785554 ~ 7788321 (-) True G153733
TU193670 other upstream 2052019 7999336 ~ 8001340 (-) False AMCG00005704
TU193709 other upstream 2144431 8091748 ~ 8124685 (-) True G153806

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00061919 True 662 lncRNA 0.57 4 NC_007116.7 3479084 ~ 3501835 (-)
grasscarp (Ctenopharyngodon idella) CI01000171_00461211_00476263.mRNA False 1784 mRNA 0.54 9 CI01000171 461211 ~ 476449 (+)